Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1249
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0778 + 7111562-7112152,7113034-7113157,7113252-7113395,711...    28   9.2  

>12_01_0778 +
           7111562-7112152,7113034-7113157,7113252-7113395,
           7113485-7113630,7113716-7113838,7113922-7114089,
           7114253-7114474,7114572-7114745
          Length = 563

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 409 GRIINRVHVRGSHFTDIVFFFYYLTKANVIQCCHKNFGTPPNVIS*TF-FVNVIQNKKLE 233
           G + +R+  RG H+T+        T  +V+Q CHKN     ++    F + N  +N  L+
Sbjct: 168 GELFDRIVARG-HYTERAAAAVMRTIMDVVQHCHKNGVMHRDLKPENFLYANASENSPLK 226

Query: 232 TI 227
            I
Sbjct: 227 VI 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,046,028
Number of Sequences: 37544
Number of extensions: 308368
Number of successful extensions: 522
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)