Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1249
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.3  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   4.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   7.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   7.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.1  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 1   VGCAELILVGFVCCWSC 51
           VG A+  + G  CCW C
Sbjct: 593 VGQAKKYVAGEQCCWHC 609


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
          protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 44 GHVRTHPGRRRF 79
          GH+RTH G + F
Sbjct: 60 GHIRTHTGEKPF 71


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 19  ILVGFVCCWSCSYTSRSTSFYVEMRKYCP 105
           +++ F  CW+  +T R    Y +   Y P
Sbjct: 275 VVILFFICWAPFHTQRLLYVYAQESDYYP 303


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +2

Query: 275 RYYVWRRTKILMATLNYVCL 334
           + Y WR T +L+    ++C+
Sbjct: 386 KQYTWRHTSVLIGWSAFLCI 405


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 215 IAIFYCF*FFILDNINKESSRYY 283
           + IFY    F +  +NKE   YY
Sbjct: 23  LLIFYGSIMFSMTQVNKEECDYY 45


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 275 RYYVWRRTKILMATLNY 325
           RY VWR T    ATL +
Sbjct: 398 RYMVWRETISSTATLGF 414


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 275 RYYVWRRTKILMATLNY 325
           RY VWR T    ATL +
Sbjct: 313 RYMVWRETISSTATLGF 329


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 275 RYYVWRRTKILMATLNY 325
           RY VWR T    ATL +
Sbjct: 632 RYMVWRETISSTATLGF 648


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 263 KESSRYYVWRRTKILMAT 316
           K    YYVWR  +I+  T
Sbjct: 140 KPYDEYYVWRDARIVNGT 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,751
Number of Sequences: 438
Number of extensions: 3999
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)