Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1248
         (800 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.70 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.8  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   3.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.7  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    23   3.7  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    23   3.7  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      23   3.7  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      23   3.7  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   8.7  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   8.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 176 PY-WAHKSPPCLIVSLQKYLALQAPTHRSQFLPIFCVNYDALTLNP 42
           PY +A+ +   + VS+   + L    H    LP FC N D L+  P
Sbjct: 93  PYSYANGAAGPIPVSMASKMGLAPTGHPGAALPFFCHNGDPLSQPP 138


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -1

Query: 110 APT-HRSQFLPIFCVNYDALTLNP 42
           APT H    LP FC N D L+  P
Sbjct: 7   APTGHPGAALPFFCHNGDPLSQPP 30


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 260 TKKLSSEVQGGFRTFDLQSVNRARTHSPSNYSQSLRLDNV*LMESYC 400
           T+ +S+  Q   R  D+Q    +  H  SN S+ +  +   +  +YC
Sbjct: 266 TQFISNTWQNSLRAADIQPTLSSIRHPESNPSERVMRELGRIFRAYC 312


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 656 QCLYFIITLEFLLKVKQHFLG*F*TQ 579
           +CL F +++ F+L VK+  +  F TQ
Sbjct: 306 KCLLFFVSVLFILLVKEGEVAFFFTQ 331


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 656 QCLYFIITLEFLLKVKQHFLG*F*TQ 579
           +CL F +++ F+L VK+  +  F TQ
Sbjct: 306 KCLLFFVSVLFILLVKEGEVAFFFTQ 331


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 656 QCLYFIITLEFLLKVKQHFLG*F*TQ 579
           +CL F +++ F+L VK+  +  F TQ
Sbjct: 306 KCLLFFVSVLFILLVKEGEVAFFFTQ 331


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 656 QCLYFIITLEFLLKVKQHFLG*F*TQ 579
           +CL F +++ F+L VK+  +  F TQ
Sbjct: 306 KCLLFFVSVLFILLVKEGEVAFFFTQ 331


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +2

Query: 146 GMAAIYEPSTDNPYIPAETVT*CKEDDY 229
           G+  +Y P  D  ++  E +   K  DY
Sbjct: 269 GLKKVYAPVVDGEFLTDEPIAIIKSGDY 296


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +2

Query: 146 GMAAIYEPSTDNPYIPAETVT*CKEDDY 229
           G+  +Y P  D  ++  E +   K  DY
Sbjct: 271 GLKKVYAPVVDGEFLTDEPIATIKSGDY 298


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +2

Query: 146 GMAAIYEPSTDNPYIPAETVT*CKEDDY 229
           G+  +Y P  D  ++  E +   K  DY
Sbjct: 269 GLKKVYAPVVDGEFLTDEPIAIIKSGDY 296


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +2

Query: 146 GMAAIYEPSTDNPYIPAETVT*CKEDDY 229
           G+  +Y P  D  ++  E +   K  DY
Sbjct: 271 GLKKVYAPVVDGEFLTDEPIAIIKSGDY 298


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 138 NNKAWRRFMSPVRIIH 185
           NN  ++ F+S V IIH
Sbjct: 209 NNGHYKNFLSQVEIIH 224


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 138 NNKAWRRFMSPVRIIH 185
           NN  ++ F+S V IIH
Sbjct: 34  NNGHYKNFLSQVEIIH 49


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,353
Number of Sequences: 336
Number of extensions: 4237
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)