Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1248
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    33   0.047
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    27   2.3  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   3.1  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   4.1  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   5.4  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   7.2  

>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 456 LYKSFREKGWAPHQTPES-NAIYLESSHIYHLYSSNEG 566
           LY++FRE  W+  + P++  ++Y+E   +YH ++S+ G
Sbjct: 199 LYQNFRENWWSNIKLPQNLKSLYVELCLVYHFHNSHLG 236


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 441 LLIRALYKSFREKGWAPHQTPESNAIYLESSHIYHLYSSNEGF 569
           L+ +  + SF+E  WA   TPE   +  ES +   +Y+ +  F
Sbjct: 212 LISKETFPSFQES-WAKKITPEDAHVNFESMNTQQIYNMSRAF 253


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 457 NALIRSILDYGTFILEPCNAVALHKLDIIQSKALRI 350
           NAL++ I  Y     E  +A+A   L+ I+SKALR+
Sbjct: 200 NALMKVIAGYDEENTEDYSALAAADLESIRSKALRV 235


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 639 NNIRVPVKSEATFLGVILDSRLTGSPHCYYISD-KCEKILNILR 511
           N+ ++ VKSE        D  LT SP+ Y+ S  + EK L + R
Sbjct: 43  NSFKLLVKSEGNNQSTTADVTLTKSPNAYHASSAREEKDLQVSR 86


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 254 FLFRAFQVYNHPLYTKLRSLLECMDYPYWAHKS 156
           F+F A Q YN   Y ++ S L   + P+W+  S
Sbjct: 393 FIFVAQQTYNALGYAQVVSDLNSTELPFWSDSS 425


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -1

Query: 164  HKSPPCLIVSLQKYLALQAPTHRSQFLPIFCVNYD 60
            H S   L    Q  L +    H  + LP  C NYD
Sbjct: 1065 HNSAYSLDAISQNLLPMLKDLHSKELLPAICFNYD 1099


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,329,350
Number of Sequences: 5004
Number of extensions: 69606
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)