Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1248
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0061 - 422914-423027,423114-423149,423250-423324,423412-42... 30 2.5
04_03_0801 - 19828175-19828770,19828913-19828994 29 3.3
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495 29 4.3
11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253... 29 4.3
10_08_0410 - 17716370-17716743,17716839-17716939,17717104-177173... 29 4.3
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076... 29 5.7
06_01_0689 + 5028932-5031013 28 7.5
05_06_0243 - 26639497-26641173 28 9.9
04_03_0802 - 19830614-19831275,19831426-19831507 28 9.9
>05_01_0061 -
422914-423027,423114-423149,423250-423324,423412-423465,
423554-423620,423912-424025,424114-424215,424220-424269,
424380-424424,424559-424642,424996-425100,425300-425443,
425535-425643,425738-425766
Length = 375
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +3
Query: 258 SQRNCRLRCRGASEHSTCKALI-----GLERIAPAIILRALDWIMSNLW 389
S RN R S ++T K + G ER+APAI++ D+ + LW
Sbjct: 76 SARNARENSSEPSSNTTLKIYVPTNPKGAERLAPAIVVPETDFHLRRLW 124
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = -3
Query: 576 LTGSPHCYYISDKCEKILNILRC-----SLEFGGEPTLSL*SFC 460
+T + C +K +KILN LRC +E+ GE + SFC
Sbjct: 6 ITVNMQCCRCKEKIDKILNCLRCKHCIEKIEYEGEKVIVRGSFC 49
>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
Length = 1086
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -3
Query: 750 KLLKVWLDNNSLSLSVPKSIIVLFSRMRLPPSVSVFYNNIRVPVKSEATFLGVILD-SRL 574
KL + L NN LS +VP SI L S ++L S + F + + V + + + L +R
Sbjct: 565 KLEHLVLSNNQLSSTVPPSIFHLSSLIQLDLSHNFFSDVLPVDIGNMKQINNIDLSTNRF 624
Query: 573 TGS 565
TGS
Sbjct: 625 TGS 627
>11_06_0442 -
23622633-23623000,23623149-23623721,23624795-23625335,
23625807-23625982,23626081-23626804
Length = 793
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 762 TYSLKLLKVWLDNNSLSLSVPKSIIVLFSRMRLPPSV 652
T +L +WLD N L +P SI L +++P S+
Sbjct: 269 TNCTQLTNLWLDRNKLQGIIPSSITNLSEGLKIPTSL 305
>10_08_0410 -
17716370-17716743,17716839-17716939,17717104-17717300,
17717392-17717677,17717768-17718004,17718226-17718281,
17720042-17721226
Length = 811
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -2
Query: 490 GAHPFSLKLLYNALIRSILDYGTFILEPCNAVALHKLDIIQSKALRII----AGAMRSSP 323
G HP+SL + N ++RS I +P + + +L+++Q K ++ A RSSP
Sbjct: 552 GGHPYSLATIRNGILRSNRRQPYTIAKPFGS-SDKRLELVQGKVNPLVHFGLCDATRSSP 610
Query: 322 I 320
I
Sbjct: 611 I 611
>11_06_0211 +
21305535-21305895,21306512-21306761,21307543-21307652,
21308836-21309067,21310233-21310603,21311434-21311507,
21311727-21311880,21312251-21312434,21313066-21313291,
21313704-21314135,21314399-21314456,21314748-21314829,
21315350-21315421,21316594-21316737,21317379-21317457,
21318023-21318105,21318198-21318252,21318488-21318778
Length = 1085
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -3
Query: 624 PVKSEATFLGVILDSRLTGSPHCYYISDKCEKILN 520
P + + +GV++ + GSPH + ISD+ +++
Sbjct: 867 PTRYDMWSVGVVMLELIVGSPHVFQISDRTRALMD 901
>06_01_0689 + 5028932-5031013
Length = 693
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 747 LLKVWLDNNSLSLSVPKSIIVLFSRMRL 664
L K+WLD+N LS ++P SI S + L
Sbjct: 152 LKKLWLDHNELSGAIPASIAQATSLLEL 179
>05_06_0243 - 26639497-26641173
Length = 558
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -2
Query: 418 ILEPCNAVALHKLDIIQSKALR 353
I+E C+A+ALH L +++S A+R
Sbjct: 320 IVEFCSAIALHSLGMLESIAIR 341
>04_03_0802 - 19830614-19831275,19831426-19831507
Length = 247
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = -3
Query: 576 LTGSPHCYYISDKCEKILNILRC-----SLEFGGEPTLSL*SFC 460
+T + C +K +KILN LRC +E+ GE + FC
Sbjct: 6 ITVNMQCCRCKEKIDKILNCLRCKHCIEKIEYEGEKVIVRGGFC 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,508,745
Number of Sequences: 37544
Number of extensions: 409219
Number of successful extensions: 894
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -