Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1248
         (800 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    43   1e-05
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    41   5e-05
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    40   9e-05
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    40   1e-04
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    38   3e-04
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    37   6e-04
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           37   8e-04
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    35   0.003
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    33   0.010
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    32   0.024
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    32   0.024
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    30   0.072
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    29   0.13 
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    27   0.67 

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
            transcriptase protein.
          Length = 1049

 Score = 42.7 bits (96), Expect = 1e-05
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
 Frame = -3

Query: 765  CTYSLKLLKV---WLDNNSLSLSVPKSIIVLFSRMRLPPSVSVFYNNIRVPVKSEATFLG 595
            CT+    +++   W   N L++ + K   V FSR R P + + F +   V  ++ A  LG
Sbjct: 789  CTFLQDCIEIFCSWCKRNGLTICIEKCYCVSFSRCRSPVTGTYFMDGTAVNRQNHAKDLG 848

Query: 594  VILDSRLTGSPHCYYISDKCEKILN-ILRCSLEF 496
            V+LDS L    H   +  +  ++L  ++R + EF
Sbjct: 849  VLLDSSLNFKQHIDDVVARGNQLLGVVIRTTNEF 882



 Score = 38.7 bits (86), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -2

Query: 484  HPFSLKLLYNALIRSILDYGTFILEPCNAVALHKLDIIQSKALR 353
            +P  +K +YN ++RS+L+Y   +  P  A ++ +++ IQ K  R
Sbjct: 884  NPMCIKAVYNCIVRSVLEYSCVVWSPTTASSIARIEAIQRKLTR 927


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 40.7 bits (91), Expect = 5e-05
 Identities = 22/87 (25%), Positives = 41/87 (47%)
 Frame = -3

Query: 735 WLDNNSLSLSVPKSIIVLFSRMRLPPSVSVFYNNIRVPVKSEATFLGVILDSRLTGSPHC 556
           W+  + L L+  K+ +V+ S  + P  ++V   ++ V       +LGV L  +L+  PH 
Sbjct: 688 WMARHHLELAPAKTEMVVISSTKAPTRITVRVGDVDVTSSRSIRYLGVTLQDKLSWLPHV 747

Query: 555 YYISDKCEKILNILRCSLEFGGEPTLS 475
             ++++  KI +     L    EP  S
Sbjct: 748 KEVTERAGKIADATSRLLRNHSEPRAS 774


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 39.9 bits (89), Expect = 9e-05
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -3

Query: 735 WLDNNSLSLSVPKSIIVLFSRMRLPPSVSVFYNNIRVPVKSEATFLGVILDSRLTGSPHC 556
           W+  + L L+  K+  VL S  + PP V+    ++ V       +LGV L   L    H 
Sbjct: 748 WMQQHGLELAPAKTEAVLISSKKTPPQVTFRVGDVEVQSSRSIRYLGVQLQDHLKWRDHV 807

Query: 555 YYISDKCEKIL 523
             +S+K  +++
Sbjct: 808 TKVSEKASRVV 818


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 39.5 bits (88), Expect = 1e-04
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = -3

Query: 744 LKVWLDNNSLSLSVPKSIIVLFSRMRLPPS-VSVFYNNIRVPVKSEATFLGVILDSRLTG 568
           +K WL  + L L+  K+ + + S ++ PP  V + +  + VP      +LGV + + L+ 
Sbjct: 760 VKQWLLEHRLELAHSKTEMTVISSLKQPPEEVFITFGGVNVPFSRSIKYLGVRVHAHLSW 819

Query: 567 SPHCYYISDKCEKILN 520
            PH   I+ K  +I++
Sbjct: 820 VPHVKEITLKATRIVH 835


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 38.3 bits (85), Expect = 3e-04
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = -3

Query: 735 WLDNNSLSLSVPKSIIVLFSRMRLP-PSVSVFYNNIRVPVKSEATFLGVILDSRLTGSPH 559
           W+  + LSL+  K+ +++ S  R    ++ V    + V  K    +LGV+L   L+  PH
Sbjct: 697 WMVQHKLSLAPEKTELLMISSKRSGYRNIPVNICGVEVRSKRSIRYLGVMLHDHLSWRPH 756

Query: 558 CYYISDKCEKILNILRCSLEFGGEPTLS 475
              ++DK  +++  LR  +     P +S
Sbjct: 757 VEMVADKALRVVRALRGIMRNHSGPQVS 784


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 37.1 bits (82), Expect = 6e-04
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -3

Query: 735 WLDNNSLSLSVPKSIIVLFSRMRLPPS-VSVFYNNIRVPVKSEATFLGVILDSRLTGSPH 559
           W+  + L L+  K+ + + S ++ PPS +S+      VP       LGV++   L+  PH
Sbjct: 707 WMQQHHLELAPAKTEMTIISSLKHPPSHISIDVRGTAVPYSRSIKHLGVLVHDHLSWIPH 766

Query: 558 CYYISDKCEKI 526
              ++ +  +I
Sbjct: 767 VTAVTQRAVQI 777


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 36.7 bits (81), Expect = 8e-04
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = -3

Query: 735 WLDNNSLSLSVPKSIIVLFSRMRLPPSVSVFYNNIRVPVKSEATFLGVILDSRLTGSPHC 556
           W+  + L ++  K+  VL S  + P  V++   ++ V       +LGV L   L+  PH 
Sbjct: 755 WMAQHHLQIAPEKTECVLISSTKNPTQVTIRVGDVEVTSSRTMRYLGVTLHDHLSWLPHV 814

Query: 555 YYISDKCEKI 526
             ++ +  KI
Sbjct: 815 REVTTRARKI 824


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 34.7 bits (76), Expect = 0.003
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -3

Query: 735 WLDNNSLSLSVPKSIIVLFSRMRLPPS-VSVFYNNIRVPVKSEATFLGVILDSRLTGSPH 559
           WL  + L L+  K+ + + S ++ PP  +++      VP      +LGV L   L+  PH
Sbjct: 702 WLREHHLELAHAKTEMTVISSLQQPPEDITITVGGTEVPFSRTLKYLGVRLHYNLSWVPH 761

Query: 558 CYYISDKCEKIL 523
              +  K  +I+
Sbjct: 762 VKAVIQKATQIV 773


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 33.1 bits (72), Expect = 0.010
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = -3

Query: 756 SLKLLKVWLDNNSLSLSVPKSIIVLFSRMRLPPSVSVFYNNIRVPVKSEATFLGVILDSR 577
           S+  ++ W+    L ++  K+  ++ S  +   S S+   + R+       +LGVI+D R
Sbjct: 656 SVSRIESWMQQMRLEIAHKKTEFLIISSHKTVQSGSIRVGDERIESIRHLKYLGVIIDDR 715

Query: 576 LTGSPHCYYISDKCEK-ILNILRCSLEFGG 490
           L+   H  Y  +   K  +++++     GG
Sbjct: 716 LSFRKHVEYACNNVFKAAISLIQIMPNIGG 745


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 31.9 bits (69), Expect = 0.024
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = -3

Query: 762 TYSLKLLKVWLDNNSLSLSVPKSIIVLFSRMRLPPSVSVFYNNIRVPVKSEATFLGVILD 583
           T +L+ ++ WL    L L+  K+  ++F    +P    +      +       +LGV L 
Sbjct: 675 TANLERIERWLRGVGLELAHQKTGFMIFCTHHVPQLAELQAGGHSIQSTETLKYLGVDLC 734

Query: 582 SRLTGSPHCYYISDKCEKILNILRC 508
            +   S H   +++K  +I N L C
Sbjct: 735 RKQHHSRHLERVANKASRITNALTC 759


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 31.9 bits (69), Expect = 0.024
 Identities = 16/80 (20%), Positives = 38/80 (47%)
 Frame = -3

Query: 753 LKLLKVWLDNNSLSLSVPKSIIVLFSRMRLPPSVSVFYNNIRVPVKSEATFLGVILDSRL 574
           ++++  W+ +N L ++  K+  ++ S  +     ++   +  V       +LG++LD RL
Sbjct: 661 IRIIDRWMTDNGLKIAPTKTEFIMVSSHQRIQHGAIRVGDHVVHSSRTLKYLGMVLDDRL 720

Query: 573 TGSPHCYYISDKCEKILNIL 514
             + H  Y  ++  K+   L
Sbjct: 721 EYTSHIRYAVERATKLWTTL 740


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 30.3 bits (65), Expect = 0.072
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -3

Query: 735 WLDNNSLSLSVPKSIIVLFSRMRLPPSVSVFYNNIRVPVKSEATFLGVILDSRL 574
           W  +N L L   K  ++ FS    P S +   +N  +        LG+ILDSRL
Sbjct: 731 WCSSNLLRLCPDKCSVISFSHSLSPISFNYTLSNSSLSRVLSIRDLGIILDSRL 784



 Score = 27.5 bits (58), Expect = 0.51
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 472 LKLLYNALIRSILDYGTFILEPCNAVALHKLDIIQSKALRI 350
           L+ LY AL+R +L+Y + I  P       +++ IQ    R+
Sbjct: 817 LRNLYYALVRPLLEYASIIWNPPTIDGCSRIESIQRLFTRV 857


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 15/82 (18%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -3

Query: 756 SLKLLKVWLDNNSLSLSVPKSIIVLFSRMRLP-PSVSVFYNNIRVPVKSEATFLGVILDS 580
           +++ +  W+ ++ L L+  K+  V+ S +R   P + +    + +  K    +LGV++  
Sbjct: 685 AVERVHAWMRHH-LQLAPEKTECVMISSLRRGHPEIPIRVGGLEIRSKQAIRYLGVMIHD 743

Query: 579 RLTGSPHCYYISDKCEKILNIL 514
                PH     +K  +++ ++
Sbjct: 744 HFLWRPHVTMAVEKANRVVKVV 765


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -3

Query: 744 LKVWLDNNSLSLSVPKSIIVLFSRMRLPP-SVSVFYNNIRVPVKSEATFLGVILDSRLTG 568
           +  W++++ L L+  K+  V+ S +R     V     +  +  K    +LGV +   L+ 
Sbjct: 691 IAAWMEDHHLQLAPEKTEGVMISSLRRGQLKVPFRVGDTIIHSKQSIRYLGVQIHDHLSW 750

Query: 567 SPHCYYISDKCEKILNIL 514
            PH    + K  +++ ++
Sbjct: 751 KPHVELSTAKALRVVGVV 768


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 823,926
Number of Sequences: 2352
Number of extensions: 16598
Number of successful extensions: 50
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84408009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)