Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1248
         (800 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U48508-1|AAC51191.1| 5038|Homo sapiens skeletal muscle ryanodine...    31   4.8  
J05200-1|AAA60294.1| 5032|Homo sapiens RYR1 protein.                   31   4.8  

>U48508-1|AAC51191.1| 5038|Homo sapiens skeletal muscle ryanodine
            receptor protein.
          Length = 5038

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 164  HKSPPCLIVSLQKYLALQAPTHRSQFLPIFCVNYDALTLNPSIIFDFGLSKQD 6
            H SPPC + +L    A +AP   S  +P+  +   AL +    + D G   +D
Sbjct: 1776 HFSPPCFVAALPAAGAAEAPARLSPAIPLEALRDKALRMLGEAVRDGGQHARD 1828


>J05200-1|AAA60294.1| 5032|Homo sapiens RYR1 protein.
          Length = 5032

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 164  HKSPPCLIVSLQKYLALQAPTHRSQFLPIFCVNYDALTLNPSIIFDFGLSKQD 6
            H SPPC + +L    A +AP   S  +P+  +   AL +    + D G   +D
Sbjct: 1775 HFSPPCFVAALPAAGAAEAPARLSPAIPLEALRDKALRMLGEAVRDGGQHARD 1827


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,838,418
Number of Sequences: 237096
Number of extensions: 2378140
Number of successful extensions: 3291
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3291
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)