Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1248
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    36   0.026
Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical p...    28   8.9  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = -2

Query: 526 SKYIALLSGVWWGAHPFSLKLLYNALIRSILDYG----TFILEPCNAVALHKLDIIQSKA 359
           ++ I  ++G  WG    ++     ALI+    YG    T +L   N   L KL+I    A
Sbjct: 664 TRVIKSMAGTSWGNDRETMLYTTQALIKPTALYGAPAWTSLLSDTN---LEKLEIAYRSA 720

Query: 358 LRIIAGAMRSSPINALQVECSEAPLHLRRQFLCDRFYL 245
           LR   G  + +P + +  EC   PL    +    + YL
Sbjct: 721 LRACVGLTKDTPTDHIYQECRVLPLKEEYKLATQQMYL 758


>Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical
           protein C35A5.3 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 182 DYPYWAH-KSPPCLIVSLQKYLALQAPTHRSQFLPIF 75
           D PYW   KSP  LIV L  +  + A    + ++PI+
Sbjct: 237 DIPYWKIIKSPVILIVWLNAFFEMTAVIFFATYMPIY 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,070,973
Number of Sequences: 27780
Number of extensions: 374942
Number of successful extensions: 748
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)