Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1248
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   1.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   1.1  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   3.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.3  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   4.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   7.6  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   7.6  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 717 LSLSVPKSIIVLFSRMRLPPSVSVFYNNIRVPVKS 613
           L+ S  + I+ L +   +P  +++FYNN    +KS
Sbjct: 506 LNFSNEEQIVDLKAFNNVPKKLNMFYNNFNSDIKS 540


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 717 LSLSVPKSIIVLFSRMRLPPSVSVFYNNIRVPVKS 613
           L+ S  + I+ L +   +P  +++FYNN    +KS
Sbjct: 506 LNFSNEEQIVDLKAFNNVPKKLNMFYNNFNSDIKS 540


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 543 DKCEKILNILRCSLEFGGE 487
           D CEK   +++C +EF  E
Sbjct: 106 DPCEKAYQLVKCYVEFHPE 124


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 1   ERSCLLRPKSKIIDGFKVRAS*LTQNIGRN 90
           E++C+L+  S   DGFKV    + +  G N
Sbjct: 164 EQTCVLKFGSWTYDGFKVDLRHMDEKSGSN 193


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 244 EHSKFIIILFTLSYGLCWNVWIIRTGLIN 158
           E+   I   + +   +C  +W++ +GLIN
Sbjct: 114 ENCSGITSAYKIEIDMCDRLWVLDSGLIN 142


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 546 SDKCEKILNILRCSLE 499
           SDKCEK    ++C  E
Sbjct: 119 SDKCEKSFMFMKCMYE 134


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 761 VQYQTCCQ 784
           VQY TCCQ
Sbjct: 344 VQYDTCCQ 351


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 765 CTYSLKLLKVWLDNNSLSL 709
           C  S KLL+ ++DNN + +
Sbjct: 112 CKKSSKLLQCFIDNNLMKI 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,422
Number of Sequences: 438
Number of extensions: 5162
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)