Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1248
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family pr...    30   2.1  
At4g30420.1 68417.m04321 nodulin MtN21 family protein similar to...    28   6.3  

>At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 371

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 438 ILLIRALYKSFREKGWAPHQTPESNA-IYLESSHIYH 545
           +L ++ L K +  + + PH+ PE ++ I+ E++H YH
Sbjct: 94  LLSLQTLEKPWELENYLPHEVPEFHSPIHSETNHYYH 130


>At4g30420.1 68417.m04321 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 373

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -2

Query: 349 IAGAMRSSPINALQVECSEAPLHLRRQFLCDRFYLEHSKFIIILFTLSYGLCWNVWII 176
           +AGA+  + +   ++  SE+ L + +  L      +++  I  LF  S  LCW+ W+I
Sbjct: 136 VAGAISMTLLRGPKILNSESALPIAKSVL-GHLKDQNTWLIGCLFLFSSTLCWSFWLI 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,002,420
Number of Sequences: 28952
Number of extensions: 351127
Number of successful extensions: 734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)