Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1247
         (809 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.13 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   2.2  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   3.8  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   5.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   6.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.8  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.8  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   8.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 534 RHCNFRSSTSTRPQEQPAQPADPYGAMFSNSQHPHSRVLYSPPHY 668
           R    R +   RP   P +P D Y   F    +P  + LY+P  Y
Sbjct: 78  RRLPLRDAVEKRPP--PDEPIDDYEPSFDLFYYPSRQTLYTPVQY 120


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 15/61 (24%), Positives = 24/61 (39%)
 Frame = +1

Query: 460 PLEPVDLGTLLHSFISTSQVWNGISDTATSVPPPALDRKNSLLSQPIRMGPCSQIRSTRT 639
           PL    +G   H +  + Q     S T +S+P       N   S    M  CS + +T +
Sbjct: 54  PLADAAVGKGFHPWKKSPQGAPSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTTAS 113

Query: 640 H 642
           +
Sbjct: 114 Y 114


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 334 TLASRWRSGAPSEAPIQHTHTAAVAPPQQLYALLLDS 224
           T AS W    P  AP+  +  A+    QQL    LD+
Sbjct: 32  TTASSWPGRPPKRAPVGLSLAASHLQQQQLKKQRLDN 68


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 501 ERMKESTQIHRLQGNLALPH--DLRPIDLLVPGPLNVDLLV 385
           E  + ST I+ +     +P    LRPI+LLV   L+V LL+
Sbjct: 350 EMTQNSTNINFVSTFFKIPFYSTLRPINLLVQIILDVILLI 390


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 247 LYALLLDSYYEFLEIVMLH 191
           L + L+D YYEFL I +++
Sbjct: 172 LNSCLMDVYYEFLLISLIN 190


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 91  PPRVINGGGRCDSQLSDLLMSLCYAAFLIAVVC 189
           PP +IN    C+S    + M++ +   + A  C
Sbjct: 190 PPTMINPSAICESAAQLIFMNVQWVRSIPAFTC 222


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 265 VAPPQQLYALLLDSYYEFL 209
           + P +Q+Y L ++ YY  L
Sbjct: 315 LVPEEQVYHLEIEKYYNIL 333


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 504 FNQSSMEWYQRHCNFRSSTSTRPQEQPAQPA 596
           FN  S E+ +    F    ++RP+ Q  QP+
Sbjct: 74  FNDYSSEYEKCDLPFNIDCTSRPKLQEPQPS 104


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 208 EIVMLHHTPQLLKKLRNTVT 149
           E + +HH+  + + +R T+T
Sbjct: 145 EFIRVHHSGSITRSIRLTIT 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,342
Number of Sequences: 336
Number of extensions: 4401
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)