Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1247
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    30   0.34 
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    28   1.4  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    27   4.2  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   4.2  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   7.3  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    25   9.6  
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    25   9.6  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 573 QEQPAQPADPYGAMFSNSQHPHSRVLYSPPHYS 671
           Q+QPAQ +   G    N Q P S  + S PHY+
Sbjct: 69  QQQPAQQSPSLGPAQQNIQQPPSVSIASQPHYA 101


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 611 HVLKFAAPALTRFVFSAALFFAHLMHYNYNYPP----FPYMLPPGVMV 742
           H   F    +  F +SA +F AH++H+N  Y      +P ++ PG ++
Sbjct: 185 HSWVFTPTPIMVFRYSALMFNAHMIHWNATYATKSENYPNLVLPGPLL 232


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 405 LNVDLLVRT*GQRLLRMLQVNQLPRLHRD 319
           + V +LV   G  LLR+L+ NQ+P  HR+
Sbjct: 278 IKVGILVNQDG--LLRLLETNQVPEQHRE 304


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +1

Query: 460 PLEPVDLGTLLHSF-ISTSQVWNGISD--TATSVPPPALDRKNSLLSQPIRMGPCSQIRS 630
           P++P+++  L  ++ +S S   N +    +++S+P P  +  +S L  PIR    S I S
Sbjct: 109 PVDPINIDELDRAYAVSPSDTSNLLHPPTSSSSIPIPIKNAGHSNLDHPIRPSLQSSISS 168

Query: 631 TR 636
            R
Sbjct: 169 NR 170


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 498  FHFNQSSMEWYQRHC 542
            FHFN SS  W  R C
Sbjct: 963  FHFNSSSKSWLYRGC 977


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = -2

Query: 373 AKTTAHVA-----SKPAATLASRWRSGAPSEA-PIQHTHTAAVAPPQ 251
           A+ TAH A     S+ A T  +    G+ + A P+Q +HT  VA PQ
Sbjct: 259 AEDTAHPAANNHHSEKAGTQINNKDKGSHNSAKPVQRSHTYPVAVPQ 305


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 668 FFAHLMHYNYNYP--PFPYMLPPGVMVRPEEGNV 763
           + AH+   N  +P  PF ++ P   +V P  GN+
Sbjct: 15  YAAHIRELNNPFPTKPFFFLKPTSAIVEPGHGNL 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,904
Number of Sequences: 5004
Number of extensions: 66562
Number of successful extensions: 221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)