Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1247
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0739 + 10834581-10835927                                         33   0.36 
09_02_0413 + 8815443-8816001,8816096-8816628,8819389-8819679           31   0.82 
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582...    30   2.5  
04_04_0969 - 29787617-29787919,29788019-29788180,29788962-297890...    29   4.4  
10_01_0322 + 3516922-3517899                                           29   5.8  
01_06_0639 + 30772804-30772904,30773386-30775675                       28   7.6  

>03_02_0739 + 10834581-10835927
          Length = 448

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 761 RCPPPDAPSRLVAAYKEKVDSCSYSALGV 675
           RCP PD    L+ A+K KVD C    L V
Sbjct: 153 RCPDPDGDHLLLRAFKNKVDYCRIHGLDV 181


>09_02_0413 + 8815443-8816001,8816096-8816628,8819389-8819679
          Length = 460

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +1

Query: 526 GISDTATSVPPPALDRKNSLLSQPIRMGPCSQIRSTRTH-AFC----ILRRTILCTPNA 687
           G+   ATS   PAL   + LL + ++   C  I S   H  FC    +L  ++LCT NA
Sbjct: 4   GLLKAATSGVKPALHDPSLLLGRTVQGNTCLHIASAHGHEEFCKDILMLNPSLLCTVNA 62


>05_02_0030 +
           5826065-5826092,5826307-5828309,5828412-5828732,
           5828821-5828907,5828981-5829583,5829680-5829844,
           5829941-5830235,5830320-5830534,5830621-5830926,
           5831200-5831263,5831384-5831623,5831756-5831853
          Length = 1474

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 685 AL*LQLSTFSLYAATRRDGASGGGQRYTSVEPTFSS 792
           +L L L  F +  A RRD  +GGG   TS EP  S+
Sbjct: 172 SLVLLLCVFVVGRAGRRDDVAGGGDGETSTEPLLSA 207


>04_04_0969 -
           29787617-29787919,29788019-29788180,29788962-29789093,
           29789708-29789760,29790518-29791007
          Length = 379

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 558 TSTRPQEQPAQPADPYGAMFSNSQHP-HSRVLYSPPHYS 671
           +S+   + P  P  P G+ F+NS HP HS   Y+P  +S
Sbjct: 326 SSSDHSDDPGSPMGPNGSTFNNSGHPMHSS--YAPVSWS 362


>10_01_0322 + 3516922-3517899
          Length = 325

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 352 ASKPA-ATLASRWRSGAPSEAPIQHTHTAAVAPPQQLYALLLDSYYEFLEIV 200
           A  PA A  ASR R+ AP + P     T   A   + YAL     YE L++V
Sbjct: 5   APAPAPAPPASRKRAAAPDDEPTATGSTTPAAKRPRRYALASVDDYEQLDVV 56


>01_06_0639 + 30772804-30772904,30773386-30775675
          Length = 796

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 579 QPAQPADPYGAMFSNSQHPHSRVLYSPPHYS 671
           QP+Q   PYG    N  +  +RV Y  P Y+
Sbjct: 164 QPSQTGGPYGFANRNEPYTSARVNYEAPGYN 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,292,940
Number of Sequences: 37544
Number of extensions: 535548
Number of successful extensions: 1860
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)