Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1247
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.63 
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_19616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)                   28   7.8  

>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1020

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 273 VWVCWIGASLGAPER--HRDASVAAGLLATCAVVFALMFGPK 392
           +W+ ++GA  GAP+R  H+    +  ++ +   +  +MFGPK
Sbjct: 786 IWLTFMGAYFGAPQRGLHQQVIRSFAMILSNLCLLVIMFGPK 827



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
 Frame = +1

Query: 46  VMIQVAIGAQWLGGSPPR-----VINGGG-----RCDSQLSDLLMSLCYAAFLIAVVC-G 192
           V++QVA    W    PP      V+          C    ++  M       L++++C G
Sbjct: 699 VLLQVAACIAWFYQYPPHAVITPVLTASSLQRLLHCAGNTNEWFMLTSGFLILLSLICTG 758

Query: 193 VALRSRGIRNNYREATHITAA 255
           +A RSR    NY  A  IT A
Sbjct: 759 LAFRSRNFPENYNHAKFITYA 779


>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1099

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 591 PADPYGAMF-SNSQHPHSRVLYSPP 662
           P DPYGAM+ SN+  PH+     PP
Sbjct: 916 PNDPYGAMYGSNAMSPHTPTQLQPP 940


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 700 LSTFSLYAATRRDGASGGGQRYTSVEPTFSSNPN 801
           L T S Y+ TR+    GG +R  S EP+ SS+ N
Sbjct: 350 LPTISAYSTTRQTNPKGGCRRRLSQEPSSSSSFN 383


>SB_19616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 322 RWRSGAPSEAPIQHTHTAAVAPPQQLYALLLDSYYEFLEIVM 197
           RW SG     P   T + A A   +L   L +SYY  L +V+
Sbjct: 193 RWTSGIEFLQPGGSTSSRAAATAVELQFALYESYYNSLAVVL 234


>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
          Length = 736

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 758 CPPPDAPSRLVAAYKEKVDSC 696
           C P DAPS + A+Y++ V  C
Sbjct: 2   CAPHDAPSTITASYRQLVGHC 22


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,652,809
Number of Sequences: 59808
Number of extensions: 550391
Number of successful extensions: 1496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)