Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1247
(809 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein. 33 0.32
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr... 33 0.32
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 29 3.0
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 29 3.0
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 29 3.0
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 29 3.0
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 29 5.2
AF016420-7|AAB65303.1| 428|Caenorhabditis elegans Serpentine re... 28 6.9
>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
Length = 1404
Score = 32.7 bits (71), Expect = 0.32
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 276 WVCWIGASLGAPERHRDASVAAGLLATCAVVFALMFGPK 392
WV WI L RD + L+A ++ +FGPK
Sbjct: 1222 WVAWITLYLVLDHEFRDTVIVVELVACATILLGFLFGPK 1260
Score = 31.1 bits (67), Expect = 0.98
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = +1
Query: 28 LLLFFAVMIQVAIGAQWL---GGSPPRVINGGGR---CDSQLSDLLMSLCYAAFLIAVVC 189
LLLFF V +Q+A+ W S VI+ + C + ++S Y LI +
Sbjct: 1133 LLLFFIVGVQIALSISWFLEPFMSTIGVIDTNVQRMMCTMGKVEFVVSNFYVMILIFMAL 1192
Query: 190 GVALRSRGIRNNYRE 234
+++ +R I+ NY+E
Sbjct: 1193 FISMLNRNIKRNYKE 1207
>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical protein
F35H10.10 protein.
Length = 1404
Score = 32.7 bits (71), Expect = 0.32
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 276 WVCWIGASLGAPERHRDASVAAGLLATCAVVFALMFGPK 392
WV WI L RD + L+A ++ +FGPK
Sbjct: 1222 WVAWITLYLVLDHEFRDTVIVVELVACATILLGFLFGPK 1260
Score = 31.1 bits (67), Expect = 0.98
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = +1
Query: 28 LLLFFAVMIQVAIGAQWL---GGSPPRVINGGGR---CDSQLSDLLMSLCYAAFLIAVVC 189
LLLFF V +Q+A+ W S VI+ + C + ++S Y LI +
Sbjct: 1133 LLLFFIVGVQIALSISWFLEPFMSTIGVIDTNVQRMMCTMGKVEFVVSNFYVMILIFMAL 1192
Query: 190 GVALRSRGIRNNYRE 234
+++ +R I+ NY+E
Sbjct: 1193 FISMLNRNIKRNYKE 1207
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
T14G10.2a protein.
Length = 1470
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = -1
Query: 296 GSYPTHPYCSGSAPAAVICVASR*LLRIPRDRNATPHTTAIKKAA*HSDIRRSDS*ESHR 117
G PT P C +PA+ C + + I A + + H R HR
Sbjct: 1354 GHSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFVSNPYQHHQTVRGHV-IGHR 1412
Query: 116 PPPLMTLGGEP-PSH*AP 66
P P++T G P+H +P
Sbjct: 1413 PMPIVTSGSATLPNHVSP 1430
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = -1
Query: 296 GSYPTHPYCSGSAPAAVICVASR*LLRIPRDRNATPHTTAIKKAA*HSDIRRSDS*ESHR 117
G PT P C +PA+ C + + I A + + H R HR
Sbjct: 1354 GHSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFVSNPYQHHQTVRGHV-IGHR 1412
Query: 116 PPPLMTLGGEP-PSH*AP 66
P P++T G P+H +P
Sbjct: 1413 PMPIVTSGSATLPNHVSP 1430
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = -1
Query: 296 GSYPTHPYCSGSAPAAVICVASR*LLRIPRDRNATPHTTAIKKAA*HSDIRRSDS*ESHR 117
G PT P C +PA+ C + + I A + + H R HR
Sbjct: 1231 GHSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFVSNPYQHHQTVRGHV-IGHR 1289
Query: 116 PPPLMTLGGEP-PSH*AP 66
P P++T G P+H +P
Sbjct: 1290 PMPIVTSGSATLPNHVSP 1307
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = -1
Query: 296 GSYPTHPYCSGSAPAAVICVASR*LLRIPRDRNATPHTTAIKKAA*HSDIRRSDS*ESHR 117
G PT P C +PA+ C + + I A + + H R HR
Sbjct: 1354 GHSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFVSNPYQHHQTVRGHV-IGHR 1412
Query: 116 PPPLMTLGGEP-PSH*AP 66
P P++T G P+H +P
Sbjct: 1413 PMPIVTSGSATLPNHVSP 1430
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = -1
Query: 296 GSYPTHPYCSGSAPAAVICVASR*LLRIPRDRNATPHTTAIKKAA*HSDIRRSDS*ESHR 117
G PT P C +PA+ C + + I A + + H R HR
Sbjct: 1354 GHSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFVSNPYQHHQTVRGHV-IGHR 1412
Query: 116 PPPLMTLGGEP-PSH*AP 66
P P++T G P+H +P
Sbjct: 1413 PMPIVTSGSATLPNHVSP 1430
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
protein F22G12.5 protein.
Length = 2396
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 505 STSQVWNGISDTATSVPPPALDRKNSLLSQPIRMGPCSQ 621
S Q W G + A ++ PP +DR+N + S R+ P Q
Sbjct: 442 SEMQPWRGRNSAARALQPPIVDRRN-MFSLYYRLQPLPQ 479
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
protein F22G12.5 protein.
Length = 2396
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 505 STSQVWNGISDTATSVPPPALDRKNSLLSQPIRMGPCSQ 621
S Q W G + A ++ PP +DR+N + S R+ P Q
Sbjct: 442 SEMQPWRGRNSAARALQPPIVDRRN-MFSLYYRLQPLPQ 479
>AF016420-7|AAB65303.1| 428|Caenorhabditis elegans Serpentine
receptor, class r protein8 protein.
Length = 428
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 605 WGHVLKFAAPALTRFVFSAALF 670
WG + F P LT FVFS LF
Sbjct: 116 WGEGIFFGYPGLTGFVFSLCLF 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,273,631
Number of Sequences: 27780
Number of extensions: 405851
Number of successful extensions: 1239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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