Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1247
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   7.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   7.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   7.7  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 476 IWVLSFILSFQPV 514
           +W+LSF++ F P+
Sbjct: 189 VWILSFVICFPPL 201


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 476 IWVLSFILSFQPVKYGM 526
           +W+L+ ++SF P+  G+
Sbjct: 149 VWLLAGLISFVPISLGL 165


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 126 ITPTSSVNDSRRRTTEPLSTN 64
           I  +  + DSR +TTE LST+
Sbjct: 666 IKASDKLKDSRIKTTEKLSTD 686


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 42  CCNDTSSNWCSVA 80
           CCN   +N CS++
Sbjct: 163 CCNSPENNTCSIS 175


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -1

Query: 65  IATCIITAKNKS 30
           ++TC++ A+NKS
Sbjct: 72  VSTCVVIARNKS 83


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 208 EIVMLHHTPQLLKKLRNTVT 149
           E + +HH+  + + +R T+T
Sbjct: 116 EFIRIHHSGSITRSIRLTIT 135


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 208 EIVMLHHTPQLLKKLRNTVT 149
           E + +HH+  + + +R T+T
Sbjct: 116 EFIRIHHSGSITRSIRLTIT 135


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 208 EIVMLHHTPQLLKKLRNTVT 149
           E + +HH+  + + +R T+T
Sbjct: 55  EFIRIHHSGSITRSIRLTIT 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,253
Number of Sequences: 438
Number of extensions: 5476
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)