Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1247
         (809 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64960.1 68414.m07363 expressed protein                             31   0.68 
At1g31750.1 68414.m03895 proline-rich family protein contains pr...    31   0.68 
At1g64950.1 68414.m07362 cytochrome P450, putative similar to cy...    31   1.2  
At1g64940.1 68414.m07361 cytochrome P450, putative similar to cy...    31   1.2  
At3g10110.1 68416.m01211 mitochondrial import inner membrane tra...    29   3.7  
At5g61290.1 68418.m07691 flavin-containing monooxygenase family ...    29   4.8  
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    28   6.4  
At3g54200.1 68416.m05991 expressed protein hin1 protein, Nicotia...    28   8.4  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    28   8.4  

>At1g64960.1 68414.m07363 expressed protein
          Length = 1168

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -3

Query: 624 NLRTWPHTDRLAEQAVLAVECWWRNG----SCSVADTIPYLTG*NERMKESTQIHRL 466
           NLR +     L  +     ECWW+ G       ++ ++P+L   +  +K+   +HR+
Sbjct: 146 NLRLFESDSVLCLEIAGVCECWWKEGLVGRESLISQSLPFLLSRSLTLKKKVDVHRV 202


>At1g31750.1 68414.m03895 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 176

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 668 FFAHLMHYNYNYPPFPYMLPPGVMVRPEEGNVTRA*NPPSAATP 799
           FF+H  H+ + YPP  Y  PP     P  G   +   PP    P
Sbjct: 13  FFSHHNHHGHGYPPGAYPPPPQGAYPPPGGYPPQGYPPPPHGYP 56


>At1g64950.1 68414.m07362 cytochrome P450, putative similar to
           cytochrome P450 89A2 (CYPLXXXIX) (SP:Q42602)
           [Arabidopsis thaliana];similar to cytochrome P450
           (GI:438242) [Solanum melongena]
          Length = 510

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = -1

Query: 752 PPDAP-SRLVAAYKEKVDSCSYSALGVQRIVRRRIQNA*VRVLRI*EHGPIRIGWLSRLF 576
           PP AP S+++++ +  + SC Y A    R++RR + +  +   R+  +   R   L  LF
Sbjct: 103 PPAAPISKIISSNQHNISSCLYGA--TWRLLRRNLTSEILHPSRVRSYSHARRWVLEILF 160

Query: 575 LRSSAGGGTEVAVSLIPFH 519
            R     G E  V +   H
Sbjct: 161 DRFGKNRGEEPIVVVDHLH 179


>At1g64940.1 68414.m07361 cytochrome P450, putative similar to
           cytochrome p450 GI:438242 from [Solanum melongena]
          Length = 511

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = -1

Query: 755 PPPDAPSRLVAAYKEKVDSCSYSALGVQRIVRRRIQNA*VRVLRI*EHGPIRIGWLSRLF 576
           PP ++ S+++++ +  + SC Y A    R++RR + +  +   R+  +   R   L  LF
Sbjct: 104 PPAESISKIISSNQHNISSCLYGA--TWRLLRRNLTSEILHPSRLRSYSHARRWVLEILF 161

Query: 575 LRSSAGGGTEVAVSLIPFH 519
            R     G E  V +   H
Sbjct: 162 GRFGKNRGEEPIVVVDHLH 180


>At3g10110.1 68416.m01211 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           weak similarity to TIM22 preprotein translocase [Rattus
           norvegicus] GI:6760457; contains Pfam profile PF02466:
           Mitochondrial import inner membrane translocase subunit
           Tim17
          Length = 173

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 538 TATSVPPPALDRKNSLLSQPIRMGPCSQIRSTRTHAFCILR 660
           T  S PP A D +NS   QPIRM    +IR+      C +R
Sbjct: 11  TGASSPPVASD-ENSTQIQPIRMPTIEEIRAQEVWNNCAVR 50


>At5g61290.1 68418.m07691 flavin-containing monooxygenase family
           protein / FMO family protein low similarity to FMO3 from
           Homo sapiens [SP|P31513]; contains Pfam profile: PF00743
           Flavin-binding monooxygenase-like; supported by
           full-length cDNA Ceres:14492
          Length = 461

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -3

Query: 624 NLRTWPHTDRLAEQAVLAVECWWRNGSCSVADTIPYLTG 508
           NL   P  + L E   +  E    +GSC VADTI Y TG
Sbjct: 261 NLHLHPQIESLEEDGRVIFE----DGSCIVADTILYCTG 295


>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
            protein / CHD family protein similar to chromatin
            remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
            GI:6478518; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
            (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 475  DLGTLLHSFISTSQVWNGISDTATSVPPPALDRKNSLLSQP 597
            D+G+  H+ + +S   N  +     +PPP+L  + S  SQP
Sbjct: 2048 DIGSSSHNAVESSSQGNPQTSATPPLPPPSLAGETSGSSQP 2088


>At3g54200.1 68416.m05991 expressed protein hin1 protein, Nicotiana
           tabacum, PIR:T03265
          Length = 235

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +1

Query: 541 ATSVPPPALDRKNSLLSQPIRMGPCSQIRSTRTHAFCILRRTILCTPNAL*LQLSTFSLY 720
           AT++ PP     +S+ +Q    G   ++R  R    CI    +L    A+ + +  F+L+
Sbjct: 18  ATAMLPPPKPNASSMETQSANTGTAKKLRRKRNCKICICFTILLILLIAIVIVILAFTLF 77

Query: 721 AATR 732
              R
Sbjct: 78  KPKR 81


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
 Frame = +3

Query: 570 PQEQPAQPADPYG---AMFSNS----QHPHSRVLYSPP 662
           P+E P QP DPY      F  S    Q PH  V++SPP
Sbjct: 412 PKESP-QPNDPYNQSPVKFRRSPPPPQQPHHHVVHSPP 448


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,113,878
Number of Sequences: 28952
Number of extensions: 375333
Number of successful extensions: 1205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)