Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1246
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.11 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    26   0.25 
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   5.3  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   7.1  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   7.1  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   7.1  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   7.1  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -2

Query: 550 ILPFHFYCHVQFYLLTFTF-*NVVHP 476
           I P HFYC    Y L  TF  NVV P
Sbjct: 307 IFPTHFYCAFSLYPLKSTFYLNVVRP 332


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 594 LFGKTVPLQIGEEHKSFLFTFIVMYNSIFSLLPS-RMLYTH 475
           L  K  PL+I E  K  L   +  Y  IFSL P     YTH
Sbjct: 256 LQAKVDPLKIPEAEKRKLIHLLQEYRCIFSLRPGLTHKYTH 296


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 566 SGRSTNPSFSLLLSCTILSSH 504
           SGR+   +FS  ++C   S H
Sbjct: 11  SGRTNGSNFSKFINCHYTSGH 31


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 317 KAGNTRS-FRKYRSRKTFSAEFFGEITLFT*VIFLESIF 204
           ++G  R+ FR   S   ++   FG  T+F  ++F E ++
Sbjct: 70  RSGKGRTTFRWLSSTSIYAYFIFGAETIFVTMVFKERLY 108


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 154 TQAVFLLVLLFNIF 113
           TQA+FL+ + +NI+
Sbjct: 185 TQAIFLMFVSYNIY 198


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 154 TQAVFLLVLLFNIF 113
           TQA+FL+ + +NI+
Sbjct: 111 TQAIFLMFVSYNIY 124


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 317 KAGNTRS-FRKYRSRKTFSAEFFGEITLFT*VIFLESIF 204
           ++G  R+ FR   S   ++   FG  T+F  ++F E ++
Sbjct: 70  RSGKGRTTFRWLSSTSIYAYFIFGAETIFVTMVFKERLY 108


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 241 PSSLRSFSLKAFFSNRISATPLLSLNFPTT 152
           P+S+ SF+L+   S   S+ P+LS    TT
Sbjct: 221 PASIDSFTLEQHRSWCSSSQPVLSTTNSTT 250


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,390
Number of Sequences: 336
Number of extensions: 3589
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)