Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1246
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545...    29   3.4  
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611...    29   4.5  
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840...    28   6.0  
02_04_0141 + 20162276-20162285,20162460-20162726,20162734-201628...    28   7.9  

>02_05_0941 +
           32953065-32953089,32954252-32954406,32954486-32954587,
           32955089-32955140,32955237-32955349,32955542-32955610,
           32955942-32956049,32956517-32956661,32957245-32957476,
           32957567-32957853,32957951-32958087,32958520-32958667,
           32959464-32959595,32960239-32960367,32960707-32960834,
           32960911-32961075,32961462-32961587,32962088-32962161,
           32962285-32962534,32962875-32963054,32963128-32963361,
           32964771-32964840,32965065-32965177,32965403-32965511,
           32965639-32965688,32965823-32965889,32966131-32966203,
           32966393-32966448,32966729-32966831,32967377-32967458,
           32967717-32967779,32967918-32967977,32968356-32968448,
           32968561-32968623,32968699-32968797
          Length = 1363

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 407 LETPELYKKLTLPHLEKEQFN 469
           +ETP +YKKL L  L+KE  N
Sbjct: 102 METPYVYKKLVLKSLDKETLN 122


>02_02_0015 +
           6109552-6109650,6110006-6110078,6111937-6111998,
           6112315-6112376,6112463-6112556,6112673-6113227,
           6113379-6113870,6113967-6114137,6115713-6115817,
           6115903-6116052,6116372-6116498,6116585-6116648,
           6117147-6117203,6117423-6117555,6117660-6117746
          Length = 776

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 265 ENVFRERYLRKLRVFPAFDYKRCENYNNLPSH**AYCQI 381
           E+   ER +R L   PA   KRC N NNL ++   +CQI
Sbjct: 7   EDERNERIIRGLLKLPA--NKRCINCNNLTTNVATFCQI 43


>07_03_0602 +
           19881998-19882217,19882303-19882496,19883719-19884039,
           19885016-19885244,19885554-19885653,19886413-19886539,
           19886603-19886780,19886859-19886917,19887082-19887568,
           19887682-19887836,19887930-19888100,19888181-19888270,
           19888714-19888872,19888940-19889223,19889435-19889498
          Length = 945

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 383 SQQEVHIVLETPELYKKL--TLPHLEKE 460
           SQQE H V E P LY+KL  +L H E E
Sbjct: 674 SQQETHHVPEPPPLYEKLMRSLEHGEPE 701


>02_04_0141 +
           20162276-20162285,20162460-20162726,20162734-20162881,
           20163025-20163091,20163878-20163955,20164034-20164039
          Length = 191

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 446 HLEKEQFNLQWVYNILEGKSEKIELYMTIKVKRKD 550
           HLE ++F+ + + +++E KS+K  L    K K+K+
Sbjct: 149 HLEPKEFSFRKIVSVVEKKSKKRNLKKKKKKKKKN 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,017,906
Number of Sequences: 37544
Number of extensions: 338512
Number of successful extensions: 698
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)