Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1246
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7588| Best HMM Match : DcpS (HMM E-Value=0)                         52   6e-07
SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)                    31   0.65 
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   31   0.86 
SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)               29   3.5  
SB_44254| Best HMM Match : Rho_N (HMM E-Value=5.7)                     28   8.0  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_7588| Best HMM Match : DcpS (HMM E-Value=0)
          Length = 446

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 25/52 (48%), Positives = 34/52 (65%)
 Frame = +2

Query: 257 TQLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLE 412
           T+L     ND+YG +  +P  T N +KTT+IYPAT +HIA  S Q V+ +LE
Sbjct: 240 TKLSVDMRNDVYGQYIGYPAPTANTIKTTVIYPATAQHIA--STQWVYNILE 289



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 22/44 (50%), Positives = 31/44 (70%)
 Frame = +1

Query: 511 DRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDLKSL 642
           +R+V ++   + GFVLLPD+KWD    E LYL+AI  +R +KSL
Sbjct: 295 ERVVFEDGDPETGFVLLPDMKWDQQQVENLYLIAICHKRGIKSL 338



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 594 DIVFIGYCQTKRPKKLRDLDEQHLPLLK 677
           ++  I  C  +  K LRDL+E+H+PLLK
Sbjct: 323 NLYLIAICHKRGIKSLRDLNEEHIPLLK 350


>SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)
          Length = 255

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 434 LTLPHL--EKEQFNLQWVYNILEGKSEKIELYMTIKV 538
           LT PHL   K+ FNLQW+  I  G    + LY+ +++
Sbjct: 50  LTGPHLMKNKKAFNLQWIMVIYNGMMSLLNLYIFLEM 86


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 159 QPHKLFSC*CYCSIFSPKQSLSILTDCHLDCCRFH 55
           QPH    C   CS  +P  +L   T CH+DCC FH
Sbjct: 833 QPHTAAVCPQPCS--AP--TLCYHTGCHVDCCAFH 863


>SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
          Length = 1311

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 516 SIFSLLPSRMLYTHCKLNCSFSR*GNVSFLYS 421
           S FS +P R+   HC+LN   SR  +V FL S
Sbjct: 421 SRFSSVPYRLSSVHCRLNSVPSRLSSVPFLLS 452


>SB_44254| Best HMM Match : Rho_N (HMM E-Value=5.7)
          Length = 209

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 129 NTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFS 251
           N  R   C V +  ++    LIL   NAF +ND  +EG+ S
Sbjct: 43  NKGRMQVCTVLRSTERHCKKLILAHGNAFSKND-DDEGFIS 82


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 635  FRSLCLTIANKYNVSLVRPSHFRSGRSTNPSFSLLL 528
            F +L L+I +  + +   P HF  GR+ +PS S LL
Sbjct: 3114 FSALSLSIGSASSSARSSPVHFNLGRAQSPSSSSLL 3149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,358,551
Number of Sequences: 59808
Number of extensions: 422607
Number of successful extensions: 923
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)