Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1246
(680 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC014532-1|AAH14532.1| 337|Homo sapiens decapping enzyme, scave... 103 4e-22
AY077684-1|AAL77216.1| 337|Homo sapiens heat shock-like protein... 103 4e-22
AY040771-1|AAK91765.1| 337|Homo sapiens histidine triad protein... 103 4e-22
AK223089-1|BAD96809.1| 337|Homo sapiens mRNA decapping enzyme v... 103 4e-22
AF532613-1|AAM90310.1| 337|Homo sapiens scavenger mRNA decappin... 103 4e-22
>BC014532-1|AAH14532.1| 337|Homo sapiens decapping enzyme,
scavenger protein.
Length = 337
Score = 103 bits (248), Expect = 4e-22
Identities = 40/83 (48%), Positives = 62/83 (74%)
Frame = +2
Query: 260 QLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLT 439
+L+ F NDIY + FPP +N VKTT++YPAT+KH+ K+ +Q++ ++ ET + Y+ +T
Sbjct: 103 ELQLQFSNDIYSTYHLFPPRQLNDVKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNIT 162
Query: 440 LPHLEKEQFNLQWVYNILEGKSE 508
LPHLE + ++QWVYNIL+ K+E
Sbjct: 163 LPHLESQSLSIQWVYNILDKKAE 185
Score = 51.2 bits (117), Expect = 3e-06
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +1
Query: 511 DRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDLKSL 642
DRIV +N +GFVL+PDLKW+ + LYL+AI +R ++SL
Sbjct: 187 DRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSL 230
Score = 30.3 bits (65), Expect = 6.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 594 DIVFIGYCQTKRPKKLRDLDEQHLPLLK 677
D+ I C + + LRDL +HLPLL+
Sbjct: 215 DLYLIAICHRRGIRSLRDLTPEHLPLLR 242
>AY077684-1|AAL77216.1| 337|Homo sapiens heat shock-like protein 1
protein.
Length = 337
Score = 103 bits (248), Expect = 4e-22
Identities = 40/83 (48%), Positives = 62/83 (74%)
Frame = +2
Query: 260 QLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLT 439
+L+ F NDIY + FPP +N VKTT++YPAT+KH+ K+ +Q++ ++ ET + Y+ +T
Sbjct: 103 ELQLQFSNDIYSTYHLFPPRQLNDVKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNIT 162
Query: 440 LPHLEKEQFNLQWVYNILEGKSE 508
LPHLE + ++QWVYNIL+ K+E
Sbjct: 163 LPHLESQSLSIQWVYNILDKKAE 185
Score = 51.2 bits (117), Expect = 3e-06
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +1
Query: 511 DRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDLKSL 642
DRIV +N +GFVL+PDLKW+ + LYL+AI +R ++SL
Sbjct: 187 DRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSL 230
Score = 30.3 bits (65), Expect = 6.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 594 DIVFIGYCQTKRPKKLRDLDEQHLPLLK 677
D+ I C + + LRDL +HLPLL+
Sbjct: 215 DLYLIAICHRRGIRSLRDLTPEHLPLLR 242
>AY040771-1|AAK91765.1| 337|Homo sapiens histidine triad protein
member 5 protein.
Length = 337
Score = 103 bits (248), Expect = 4e-22
Identities = 40/83 (48%), Positives = 62/83 (74%)
Frame = +2
Query: 260 QLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLT 439
+L+ F NDIY + FPP +N VKTT++YPAT+KH+ K+ +Q++ ++ ET + Y+ +T
Sbjct: 103 ELQLQFSNDIYSTYHLFPPRQLNDVKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNIT 162
Query: 440 LPHLEKEQFNLQWVYNILEGKSE 508
LPHLE + ++QWVYNIL+ K+E
Sbjct: 163 LPHLESQSLSIQWVYNILDKKAE 185
Score = 51.2 bits (117), Expect = 3e-06
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +1
Query: 511 DRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDLKSL 642
DRIV +N +GFVL+PDLKW+ + LYL+AI +R ++SL
Sbjct: 187 DRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSL 230
Score = 30.3 bits (65), Expect = 6.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 594 DIVFIGYCQTKRPKKLRDLDEQHLPLLK 677
D+ I C + + LRDL +HLPLL+
Sbjct: 215 DLYLIAICHRRGIRSLRDLTPEHLPLLR 242
>AK223089-1|BAD96809.1| 337|Homo sapiens mRNA decapping enzyme
variant protein.
Length = 337
Score = 103 bits (248), Expect = 4e-22
Identities = 40/83 (48%), Positives = 62/83 (74%)
Frame = +2
Query: 260 QLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLT 439
+L+ F NDIY + FPP +N VKTT++YPAT+KH+ K+ +Q++ ++ ET + Y+ +T
Sbjct: 103 ELQLQFSNDIYSTYHLFPPRQLNDVKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNIT 162
Query: 440 LPHLEKEQFNLQWVYNILEGKSE 508
LPHLE + ++QWVYNIL+ K+E
Sbjct: 163 LPHLESQSLSIQWVYNILDKKAE 185
Score = 51.2 bits (117), Expect = 3e-06
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +1
Query: 511 DRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDLKSL 642
DRIV +N +GFVL+PDLKW+ + LYL+AI +R ++SL
Sbjct: 187 DRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSL 230
Score = 30.3 bits (65), Expect = 6.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 594 DIVFIGYCQTKRPKKLRDLDEQHLPLLK 677
D+ I C + + LRDL +HLPLL+
Sbjct: 215 DLYLIAICHRRGIRSLRDLTPEHLPLLR 242
>AF532613-1|AAM90310.1| 337|Homo sapiens scavenger mRNA decapping
enzyme protein.
Length = 337
Score = 103 bits (248), Expect = 4e-22
Identities = 40/83 (48%), Positives = 62/83 (74%)
Frame = +2
Query: 260 QLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLT 439
+L+ F NDIY + FPP +N VKTT++YPAT+KH+ K+ +Q++ ++ ET + Y+ +T
Sbjct: 103 ELQLQFSNDIYSTYHLFPPRQLNDVKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNIT 162
Query: 440 LPHLEKEQFNLQWVYNILEGKSE 508
LPHLE + ++QWVYNIL+ K+E
Sbjct: 163 LPHLESQSLSIQWVYNILDKKAE 185
Score = 51.2 bits (117), Expect = 3e-06
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +1
Query: 511 DRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDLKSL 642
DRIV +N +GFVL+PDLKW+ + LYL+AI +R ++SL
Sbjct: 187 DRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSL 230
Score = 30.3 bits (65), Expect = 6.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 594 DIVFIGYCQTKRPKKLRDLDEQHLPLLK 677
D+ I C + + LRDL +HLPLL+
Sbjct: 215 DLYLIAICHRRGIRSLRDLTPEHLPLLR 242
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,726,118
Number of Sequences: 237096
Number of extensions: 1975312
Number of successful extensions: 3805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3805
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -