Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1246
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY079166-1|AAL86013.1|  311|Caenorhabditis elegans heat shock-li...    87   1e-17
AL132858-5|CAB60481.1|  311|Caenorhabditis elegans Hypothetical ...    87   1e-17
AF045644-2|AAC02600.1|  454|Caenorhabditis elegans Hypothetical ...    29   3.1  
U41105-8|AAA82403.1|  460|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AY079166-1|AAL86013.1|  311|Caenorhabditis elegans heat shock-like
           protein protein.
          Length = 311

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 39/87 (44%), Positives = 57/87 (65%)
 Frame = +2

Query: 248 LQKTQLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELY 427
           L   QL+    NDI+G++       +N +K+ +IYP  D+ IAK+ Q+E  ++ ETPELY
Sbjct: 73  LATAQLQEISRNDIFGSYNIEIDPKLNLLKSQLIYPINDRLIAKYRQEEKFVIRETPELY 132

Query: 428 KKLTLPHLEKEQFNLQWVYNILEGKSE 508
           + +T P++EK Q NL WVYN LE +SE
Sbjct: 133 ETVTRPYIEKYQLNLNWVYNCLEKRSE 159



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/44 (52%), Positives = 31/44 (70%)
 Frame = +1

Query: 511 DRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDLKSL 642
           D+IV ++   + GFVLL D+KWDG T E LY+LAI  +  LKS+
Sbjct: 161 DKIVFEDPDNENGFVLLQDIKWDGKTLENLYVLAICHRHGLKSV 204


>AL132858-5|CAB60481.1|  311|Caenorhabditis elegans Hypothetical
           protein Y113G7A.9 protein.
          Length = 311

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 39/87 (44%), Positives = 57/87 (65%)
 Frame = +2

Query: 248 LQKTQLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELY 427
           L   QL+    NDI+G++       +N +K+ +IYP  D+ IAK+ Q+E  ++ ETPELY
Sbjct: 73  LATAQLQEISRNDIFGSYNIEIDPKLNLLKSQLIYPINDRLIAKYRQEEKFVIRETPELY 132

Query: 428 KKLTLPHLEKEQFNLQWVYNILEGKSE 508
           + +T P++EK Q NL WVYN LE +SE
Sbjct: 133 ETVTRPYIEKYQLNLNWVYNCLEKRSE 159



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/44 (52%), Positives = 31/44 (70%)
 Frame = +1

Query: 511 DRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDLKSL 642
           D+IV ++   + GFVLL D+KWDG T E LY+LAI  +  LKS+
Sbjct: 161 DKIVFEDPDNENGFVLLQDIKWDGKTLENLYVLAICHRHGLKSV 204


>AF045644-2|AAC02600.1|  454|Caenorhabditis elegans Hypothetical
           protein F57H12.4 protein.
          Length = 454

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 409 QHNMNFLLAKFGNMLISGWVDYCSFHTVYSR-RRETLEVSVNIVLEKRFQLSFLE 248
           Q+  N ++  F  + I G V       V++R R+ +LEV    +LEKR   SFL+
Sbjct: 16  QNRQNIIIFPFETVCIPGIVAAVLSAIVFARLRQSSLEVDEWSILEKRIYNSFLK 70


>U41105-8|AAA82403.1|  460|Caenorhabditis elegans Hypothetical
           protein T02G5.4 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +2

Query: 257 TQLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKL 436
           T++K   E  +Y +   FP  TI+           DKHIA F+     ++L + E   + 
Sbjct: 289 TKIKKIKEGSVYSSIPIFPGGTIS-----------DKHIAAFTDGAAAVILASQEAVSEQ 337

Query: 437 TLPHLEK 457
            L  L +
Sbjct: 338 NLKPLAR 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,530,199
Number of Sequences: 27780
Number of extensions: 337673
Number of successful extensions: 909
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)