Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1246
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.2  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 479 VYNILEGKSEKIELYMTIKVKRKDLCSSPI*SGTVLPKRHCIYWLL 616
           V   L GK + I   +   ++ KD+   P+ + + L KRH I  ++
Sbjct: 106 VVKYLGGKHKFISKKIKKTMENKDITKRPLPNESQLIKRHPIVTIM 151


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 144 TACVVGKFKDKSG 182
           T C +GKFK ++G
Sbjct: 263 TECPIGKFKHEAG 275


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 418 WSFQHNMNFLLAKFGNMLISGW 353
           W   HN  +   ++GN  I+G+
Sbjct: 210 WRITHNFFYFDPRYGNYNINGF 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,524
Number of Sequences: 438
Number of extensions: 4135
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)