Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1244X
         (525 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   0.71 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   1.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   3.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   3.8  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 121 QGSQHVGKGVHTSSVTTEKNVCYAPFGALLFSTKSK*QPR 240
           +GS  + + +  S V    N C  P G L+ S+  K QPR
Sbjct: 110 KGSHWMNQDISFSRVKLT-NTCSPPQGQLVLSSMHKYQPR 148


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 380 IHFRKEKGFKVHWNAGRLENFLYSVDKLRTYTVPR 276
           +  +KE G+KV W+  +    +Y  D+   +  P+
Sbjct: 303 VELQKEGGWKVVWDDTQKNTHMYKGDQWVAFDSPK 337


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 185 VMHHLEPCYFQQSPNSNRGQQR 250
           ++HHLEP   Q  P S     R
Sbjct: 11  MVHHLEPHRMQIKPQSPSSSSR 32


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 185 VMHHLEPCYFQQSPNSNRGQQR 250
           ++HHLEP   Q  P S     R
Sbjct: 11  MVHHLEPHRMQIKPQSPSSSSR 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,082
Number of Sequences: 336
Number of extensions: 2943
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12678017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)