BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1244X (525 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 60 2e-10 SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 60 2e-10 SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 29 0.42 SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le... 29 0.42 SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 28 0.74 SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ... 27 1.3 SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 27 1.7 SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 1.7 SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 27 1.7 SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 27 2.3 SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 26 4.0 SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 25 6.9 SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 25 6.9 SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 6.9 SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.1 SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 25 9.1 SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi... 25 9.1 >SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 356 Score = 60.5 bits (140), Expect = 2e-10 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Frame = +3 Query: 249 GRRIKCTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEV---NPTLSAPLEDVVNS 419 G + TLIPGDG+G E AV E+FK A++P++FE + + N + L + + S Sbjct: 18 GGKYTVTLIPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQS 77 Query: 420 IAVNKICIKGILATP 464 + NK+ +KGIL TP Sbjct: 78 LKRNKVGLKGILFTP 92 >SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 378 Score = 60.1 bits (139), Expect = 2e-10 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%) Frame = +3 Query: 267 TLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEV--NPTLSAPLEDVVNSIAVNKIC 440 T+I GDG+GPE+ +V+ +FKAA +P+++E + N T + P +D S+ NK+ Sbjct: 49 TMIAGDGIGPEIAQSVERIFKAAKVPIEWERVKVYPILKNGTTTIP-DDAKESVRKNKVA 107 Query: 441 IKGILATP 464 +KG LATP Sbjct: 108 LKGPLATP 115 >SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||Manual Length = 426 Score = 29.1 bits (62), Expect = 0.42 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = +3 Query: 138 WKGCTHKFGNNGEKCMLCTIWSPA-IFNKVQIATEGNKGRRIKCT 269 +KG + F + EK C + + A I +K A+ GNKG +KC+ Sbjct: 140 FKGHSEPFYSISEKYSFCNLKTSALILSKAASASIGNKGLFLKCS 184 >SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Leu1|Schizosaccharomyces pombe|chr 2|||Manual Length = 371 Score = 29.1 bits (62), Expect = 0.42 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +3 Query: 261 KCTLIPGDGVGPELVYAVQEVFK 329 K ++PGD +GPE+V + EV K Sbjct: 5 KIVVLPGDHIGPEIVASALEVLK 27 >SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||Manual Length = 685 Score = 28.3 bits (60), Expect = 0.74 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -3 Query: 202 LQMVHNIHFSPLLPNLCVH 146 LQ H++H SPL P CVH Sbjct: 261 LQGTHSVHGSPLKPEDCVH 279 >SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces pombe|chr 1|||Manual Length = 362 Score = 27.5 bits (58), Expect = 1.3 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 252 RRIKCTLIPGDGVGPELVYAVQEVFK 329 RRI LIP DG+G E+V A + + + Sbjct: 5 RRIVLGLIPADGIGKEVVPAARRLME 30 >SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac1|Schizosaccharomyces pombe|chr 2|||Manual Length = 384 Score = 27.1 bits (57), Expect = 1.7 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -2 Query: 437 NLVNSDGVYDVFEWCTKCWIHFRKEKGFKVHW 342 N VN+ VY +F WI+ R FK+ W Sbjct: 269 NYVNTVIVYPIFVIFVFVWIYMRHYLNFKIMW 300 >SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Spt6|Schizosaccharomyces pombe|chr 1|||Manual Length = 1365 Score = 27.1 bits (57), Expect = 1.7 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = -2 Query: 440 TNLVNSDGVYDVFEWCTKCW-IHFRKEKGFKVHWNAG 333 T L++ + ++++F CTK W +H +K+ K++ + G Sbjct: 355 TPLLSQNDLWNIFFLCTKFWSLHSKKQDILKLYSDLG 391 >SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 304 Score = 27.1 bits (57), Expect = 1.7 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = -2 Query: 440 TNLVNSDGVYDVFEWCTKCWIHFRKEKGFKVH 345 +N + S G+ + +C+ C R E GFK H Sbjct: 13 SNALKSKGLQRLRWYCSACQKQMRDENGFKCH 44 >SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Schizosaccharomyces pombe|chr 1|||Manual Length = 794 Score = 26.6 bits (56), Expect = 2.3 Identities = 21/70 (30%), Positives = 34/70 (48%) Frame = +3 Query: 294 PELVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFS 473 P A+Q++ S P+D + F ++N +LS +D+V S A+ K K I D S Sbjct: 533 PSKTAALQKLKFFQSRPLDGLNKFSKKINISLSGVQKDIVRSDALLKFSNK-IGVVHDIS 591 Query: 474 HTGELQTLNM 503 + LN+ Sbjct: 592 DENQEDHLNL 601 >SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|||Manual Length = 1018 Score = 25.8 bits (54), Expect = 4.0 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = +3 Query: 381 PTLSAPLEDVVNSIAVNKICIKGILATPDFSHTGELQTLNMKLV 512 P+L A +D+ N V + +K + + P+F+ T LQ K++ Sbjct: 948 PSLLAIPKDMNNPTVVRLLALKCLGSLPEFTPTTNLQLFRDKVI 991 >SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces pombe|chr 2|||Manual Length = 613 Score = 25.0 bits (52), Expect = 6.9 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = -2 Query: 284 VPRNQGAFDTPSFVA 240 +P +QGA TPSFVA Sbjct: 31 IPNDQGARTTPSFVA 45 >SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 463 Score = 25.0 bits (52), Expect = 6.9 Identities = 7/20 (35%), Positives = 11/20 (55%) Frame = -2 Query: 395 CTKCWIHFRKEKGFKVHWNA 336 CT C + F + K+HW + Sbjct: 7 CTTCTVAFNNAESQKIHWKS 26 >SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual Length = 963 Score = 25.0 bits (52), Expect = 6.9 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +2 Query: 167 QRRKMYVMHHLEPCYFQQSPN 229 ++ K Y H E Y+QQSP+ Sbjct: 341 EKEKSYSQDHAELSYYQQSPS 361 >SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1098 Score = 24.6 bits (51), Expect = 9.1 Identities = 12/46 (26%), Positives = 20/46 (43%) Frame = +3 Query: 369 SEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFSHTGELQTLNMK 506 S++N A LED N +C++ +A S LQ + + Sbjct: 541 SQLNVFTKASLEDKQKKEKYNLLCVRSCIAIDSISWISSLQGVKFR 586 >SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met11|Schizosaccharomyces pombe|chr 1|||Manual Length = 641 Score = 24.6 bits (51), Expect = 9.1 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 9/65 (13%) Frame = +3 Query: 282 DGVGPELVYAVQEVFKAASIPVD-------FESFFFSEVN--PTLSAPLEDVVNSIAVNK 434 DG GP L + E K PVD F+ S+++ P + P+E +IA Sbjct: 415 DGYGPTLHFPPSEALKLWGYPVDESDITSLFQKHIMSDISAIPWIDEPVEVETKTIAKYL 474 Query: 435 ICIKG 449 + + G Sbjct: 475 LKLNG 479 >SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 284 Score = 24.6 bits (51), Expect = 9.1 Identities = 11/37 (29%), Positives = 19/37 (51%) Frame = +3 Query: 312 VQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSI 422 ++ V A + +DF + FS PLED+ N++ Sbjct: 23 IRFVTPATTDSMDFTAISFSWEESNTGIPLEDITNTV 59 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,268,965 Number of Sequences: 5004 Number of extensions: 50167 Number of successful extensions: 150 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 148 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 214353836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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