Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1244X
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0109 + 19126849-19126917,19129883-19130620                       28   5.3  
01_06_1514 - 37892552-37893074,37893291-37893367,37893471-378935...    27   7.0  
10_01_0344 - 3777610-3777758,3777870-3777959,3778950-3779025,377...    27   9.2  
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715...    27   9.2  
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351     27   9.2  

>11_05_0109 + 19126849-19126917,19129883-19130620
          Length = 268

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 426 VNKICIKGILATPDFSHTGELQTLNMKLVMPW 521
           +NKI  KG + +PD S    L+ +N     PW
Sbjct: 192 INKILTKGAVMSPDSSIRDVLREINAHCKKPW 223


>01_06_1514 -
           37892552-37893074,37893291-37893367,37893471-37893587,
           37893826-37893926,37895077-37895146,37895318-37895415,
           37896326-37896419,37896792-37896882,37897222-37897547,
           37898193-37898278,37899078-37899417
          Length = 640

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 321 VFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNK 434
           V +++SIP +     +  + PT+ + L   VNS  VN+
Sbjct: 403 VSRSSSIPPNTRDALYQSLPPTVKSSLRSKVNSFVVNE 440


>10_01_0344 -
           3777610-3777758,3777870-3777959,3778950-3779025,
           3779206-3779288,3780456-3780799,3782064-3782113,
           3782406-3782542,3782692-3782776
          Length = 337

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +3

Query: 246 KGRRIKCTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEVNPTLSA 395
           KG+ IKC      G G  LV    EV   A + V  +  F S  +  LSA
Sbjct: 21  KGKPIKCKAAVAHGPGEALVMEEVEVAPPARMEVRLKVLFTSICHTDLSA 70


>06_03_0151 + 17270688-17270698,17271149-17271281,17271548-17271589,
            17271706-17271815,17271957-17272035,17272114-17272287,
            17272386-17272466,17272761-17272988,17273067-17273402,
            17273501-17273586,17273642-17273783,17274596-17274687,
            17274770-17274904,17275142-17275304,17275393-17275482,
            17275568-17275753,17276109-17276141,17276700-17276762,
            17276839-17276901,17276983-17277042,17277258-17277410,
            17277530-17277613,17278434-17278610,17278685-17278791,
            17278858-17279071,17279158-17279261,17279926-17280061,
            17280191-17280316,17280682-17280792,17280968-17281066,
            17281367-17281633,17281707-17281822,17281853-17282084,
            17282597-17282664,17282682-17282807,17282980-17283040
          Length = 1495

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 384  TLSAPLEDVVNSIAVNKI-CIKGILATPDFSHTGELQTLNMKLVMP 518
            T    L D +N      I  +KG LA  DFS  GE++   + L  P
Sbjct: 1125 TFEKVLSDEINKEVAQTIQMLKGKLAQDDFSALGEIRKTVLNLTAP 1170


>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
          Length = 1007

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 253 LPLLPSVAIWTLLKIAGLQMVHNIHFSPLLPNL 155
           LPLLPS  +   +  AG  ++  +H    LP+L
Sbjct: 756 LPLLPSTLVELKISEAGFSVLPEVHAPRFLPSL 788


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,219,778
Number of Sequences: 37544
Number of extensions: 303397
Number of successful extensions: 626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)