Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1244X
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_6361| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.77 
SB_31735| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_10370| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +3

Query: 249 GRRIKCTLIPGDGVGPELVYAVQEVFK 329
           G R   TLIPGDGVGPELV  V+++FK
Sbjct: 63  GGRHTVTLIPGDGVGPELVNCVKQMFK 89


>SB_6361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 380 IHFRKEKGFKVHWNAGRLENFLYSVDKLRTYTVPRNQGAFDTPSF 246
           I F  EK ++V W A      +  V + + Y + R+   F  P F
Sbjct: 346 IRFLHEKDYRVSWKADGTRYMMLVVGEGQVYLIDRDNAVFSAPQF 390


>SB_31735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -1

Query: 192 CITYIFLRCYRTCVYTLSNMLRSLHNSSKNIPA 94
           C+ ++F+  YR   + L  +LRS H++ +NIP+
Sbjct: 315 CLYFVFIENYR---HGLRRVLRSAHDARRNIPS 344


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 416 VYDVFEWCTKCWIHFRKEKGFKVHWNAGRLENFLYSVDKLRTYTVPRNQGAFD 258
           +Y  F     CW+HF+K+K  + H N     +F  + D L    +  N+G  D
Sbjct: 46  MYVRFGGTASCWMHFKKDKALE-HKN---FTDFTITPDDLERIAMIGNKGGVD 94


>SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 321 VFKAASIPVDFESFFFSEVNPTLSAPLEDV 410
           VFK A+ P  F  F   E+NPTL A   D+
Sbjct: 216 VFKIANCPRAFVDFSKGEINPTLEARRSDL 245


>SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1209

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 189 CTIWSPAIFNKVQIATEGNKGRRIKCTLIPGDGVGPELVYAVQEVFKAASIPVD 350
           C +  P +     +A+    G  +  T+IPGDG GP + + +  V  +  I +D
Sbjct: 603 CYVSYPGLPGGGMVASHVTVGTTL--TVIPGDGEGPVISHVINFVNTSGPITID 654


>SB_10370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 270 LIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSE 374
           +IPGDG+GPE+    ++   A +  V   +F + E
Sbjct: 7   VIPGDGIGPEVTEQAKKALNAVA-DVYNHTFIYKE 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,641,377
Number of Sequences: 59808
Number of extensions: 361731
Number of successful extensions: 837
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)