Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1244X
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81046-1|CAB02822.1|  379|Caenorhabditis elegans Hypothetical pr...    89   2e-18
Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical pr...    51   4e-07
Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical pr...    47   9e-06
AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical ...    46   2e-05
AF002196-2|AAP68956.1|  915|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF002196-1|AAP68955.1|  913|Caenorhabditis elegans Hypothetical ...    29   2.7  

>Z81046-1|CAB02822.1|  379|Caenorhabditis elegans Hypothetical
           protein C37E2.1 protein.
          Length = 379

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 43/88 (48%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
 Frame = +3

Query: 252 RRIKCTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIA-V 428
           +++K T+IPGDGVGPEL+Y VQ++ K   IP++FE  F SEV+ T S+ +E+ V SI   
Sbjct: 41  QKLKVTIIPGDGVGPELIYTVQDIVKQTGIPIEFEEIFLSEVHYTRSSSIENAVESIGRN 100

Query: 429 NKICIKGILATPDFSHT-GELQTLNMKL 509
           N + +KG +      HT GELQ LNM+L
Sbjct: 101 NNVALKGAIEESAVLHTEGELQGLNMRL 128


>Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical
           protein F35G12.2 protein.
          Length = 396

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 24/71 (33%), Positives = 39/71 (54%)
 Frame = +3

Query: 249 GRRIKCTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAV 428
           G R   T++PGDG+GPE+++ V+ +  A   PVDFE    +      S  L + + +I  
Sbjct: 49  GGRHNVTVLPGDGIGPEMLHHVERILSAVQAPVDFEVVNLTS-KEDASEDLAEAITAIKR 107

Query: 429 NKICIKGILAT 461
           N + +KG + T
Sbjct: 108 NGVALKGNIET 118


>Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical
           protein F43G9.1 protein.
          Length = 358

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
 Frame = +3

Query: 261 KCTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEV---NPTLSAPLEDVVNSIAVN 431
           + TLIPGDG+GPE+  +VQ++F+AA  P+ ++    + V   +     P    +  +  N
Sbjct: 26  RVTLIPGDGIGPEISASVQKIFEAADAPIAWDPVDVTPVKGRDGVFRIP-SRCIELMHAN 84

Query: 432 KICIKGILATP 464
           K+ +KG L TP
Sbjct: 85  KVGLKGPLETP 95


>AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical
           protein C30F12.7 protein.
          Length = 373

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
 Frame = +3

Query: 249 GRRIKCTLIPGDGVGPELVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAV 428
           GR   C L PGDG+GPE++  ++ +F     PV+FE    S  +  L   ++  + +I  
Sbjct: 34  GRHTVCAL-PGDGIGPEMIAHIRNIFSFCHAPVNFEEVQVS--SSLLDGDMDAAMLAIER 90

Query: 429 NKICIKGILAT----PDF-SHTGELQT 494
           N + IKG + T    P F S   EL+T
Sbjct: 91  NGVAIKGNIETKHDDPQFNSRNVELRT 117


>AF002196-2|AAP68956.1|  915|Caenorhabditis elegans Hypothetical
           protein C09D4.4b protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 43  NIYI*QTFLSNSNMSFLSRNIFRAVMQGSQHVGKGVHTSSVTTEKNVCYAPFGALLFSTK 222
           ++Y   T+LS   MS  S  +  A  Q   +  +   ++  T  + V  +   ALLF+T+
Sbjct: 155 SLYFDSTYLSAITMSVFSSLVMVATRQRKANASESASSTKSTKLRRVYNSSAHALLFATR 214

Query: 223 S 225
           S
Sbjct: 215 S 215


>AF002196-1|AAP68955.1|  913|Caenorhabditis elegans Hypothetical
           protein C09D4.4a protein.
          Length = 913

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 43  NIYI*QTFLSNSNMSFLSRNIFRAVMQGSQHVGKGVHTSSVTTEKNVCYAPFGALLFSTK 222
           ++Y   T+LS   MS  S  +  A  Q   +  +   ++  T  + V  +   ALLF+T+
Sbjct: 155 SLYFDSTYLSAITMSVFSSLVMVATRQRKANASESASSTKSTKLRRVYNSSAHALLFATR 214

Query: 223 S 225
           S
Sbjct: 215 S 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,430,523
Number of Sequences: 27780
Number of extensions: 277405
Number of successful extensions: 694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)