Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1244X
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   1.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   1.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 386 CWIHFRKEKGFKVHWNAGRLENFL 315
           C++   KE+GF  +W  G L N +
Sbjct: 59  CFVRIPKEQGFLSYWR-GNLANVI 81


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 386 CWIHFRKEKGFKVHWNAGRLENFL 315
           C++   KE+GF  +W  G L N +
Sbjct: 59  CFVRIPKEQGFLSYWR-GNLANVI 81


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 311 SVDKLRTYTVPRNQGAFDTPSFVALGCY 228
           ++D   TY V  +  +F  P  V LG Y
Sbjct: 185 ALDLTPTYAVVSSSISFYVPCIVMLGIY 212


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 493 VCSSPV*EKSGVAKIPLIQILLTA 422
           VCSSP  E   V  +P+++ +L A
Sbjct: 604 VCSSPRSEDKEVEDMPVLKRVLQA 627


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,889
Number of Sequences: 438
Number of extensions: 3311
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)