Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1243
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    26   0.28 
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   4.6  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    22   4.6  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    22   4.6  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    22   6.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.0  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   8.0  

>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +1

Query: 154 CTTKSKHGDMLTMHY--TGTLDDGHKFDSSYDRDQPLRSK 267
           CT K K G    +HY      D  ++ ++ YD+D   R K
Sbjct: 78  CTEKQKEGSRKIIHYLIDNKRDWWNELEAKYDKDGVYRQK 117


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 650 MKPFLSLSSCWKI 612
           MKP LSL + WK+
Sbjct: 1   MKPLLSLVTLWKL 13


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 322 THMSSKPWSHPLITCPTPIWNVKVDRDHNSSRTCVRRLACQC 197
           TH+  + + + L+   T  +  K   D + +   +RRL  QC
Sbjct: 54  THLGGEDFDNRLVEYCTQDFKKKHKADISGNPRALRRLRTQC 95


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 322 THMSSKPWSHPLITCPTPIWNVKVDRDHNSSRTCVRRLACQC 197
           TH+  + + + L+   T  +  K   D + +   +RRL  QC
Sbjct: 54  THLGGEDFDNRLVEYCTQDFKKKHKADISGNPRALRRLRTQC 95


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 184 LTMHYTGTLDDGHKFDSSYD 243
           L +HY  + D  HK+ + YD
Sbjct: 12  LFVHYGWSEDTTHKYTTKYD 31


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 103 GPEVTELKTEVVSVPEGCT 159
           GP++TEL+ E +   +  T
Sbjct: 282 GPQITELEPETIESQDAIT 300


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 103 GPEVTELKTEVVSVPEGCT 159
           GP++TEL+ E +   +  T
Sbjct: 515 GPQITELEPETIESQDAIT 533


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 103 GPEVTELKTEVVSVPEGCT 159
           GP++TEL+ E +   +  T
Sbjct: 515 GPQITELEPETIESQDAIT 533


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 514 SLFAGEHVVLIGVDFLEHVCGRWRVTDVDQLHFEM 410
           S+F G   V++ V      CG   VT +   HF++
Sbjct: 178 SVFFGNKPVILTVVLPLLACGVMVVTHITMAHFKI 212


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,565
Number of Sequences: 336
Number of extensions: 3602
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)