BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1243 (756 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 56 4e-09 SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 51 2e-07 SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 48 1e-06 SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 29 0.54 SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 2.9 SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 3.8 SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 26 5.0 SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 26 6.7 SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 25 8.8 SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 8.8 SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 25 8.8 >SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase Fkh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 112 Score = 56.4 bits (130), Expect = 4e-09 Identities = 25/43 (58%), Positives = 30/43 (69%) Frame = +3 Query: 249 STFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERG 377 S F IGVGQ+I+GWD+G+ M +GEK KLTI GYG RG Sbjct: 45 SPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRG 87 Score = 49.2 bits (112), Expect = 6e-07 Identities = 21/38 (55%), Positives = 26/38 (68%) Frame = +1 Query: 169 KHGDMLTMHYTGTLDDGHKFDSSYDRDQPLRSKLALGK 282 K GD +TMHYTGTL +G KFDSS DR P + +G+ Sbjct: 18 KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQ 55 Score = 27.5 bits (58), Expect = 2.2 Identities = 11/19 (57%), Positives = 16/19 (84%) Frame = +2 Query: 386 VIPPHATLHFEVELINIGD 442 +IPP++TL F+VEL+ I D Sbjct: 91 LIPPNSTLLFDVELLAIND 109 >SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |Schizosaccharomyces pombe|chr 1|||Manual Length = 362 Score = 50.8 bits (116), Expect = 2e-07 Identities = 20/40 (50%), Positives = 30/40 (75%) Frame = +3 Query: 255 FTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGER 374 FTF +G+ +VIKGWD G++ M VG +R + IPA++ YG + Sbjct: 302 FTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYGSK 341 >SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomerase|Schizosaccharomyces pombe|chr 2|||Manual Length = 361 Score = 48.4 bits (110), Expect = 1e-06 Identities = 20/40 (50%), Positives = 28/40 (70%) Frame = +3 Query: 255 FTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGER 374 F F +G G+VI+GWD G+ M G +RK+TIPA + YG + Sbjct: 301 FAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQ 340 Score = 26.6 bits (56), Expect = 3.8 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = +1 Query: 100 AGPEVTELKTEVV--SVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSS 237 + P+ LK VV V G + +G + M Y G L++G FD + Sbjct: 248 SSPKTRTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENGKVFDKN 295 >SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schizosaccharomyces pombe|chr 1|||Manual Length = 190 Score = 29.5 bits (63), Expect = 0.54 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Frame = +1 Query: 586 ESHDKLVEEIFQHEDKDKNGFISHEEF-SGPKHDEL*MSLRSL 711 ++ +K V +IF DK+K+G ++ EEF G K D +S SL Sbjct: 143 DTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSALSL 185 >SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|Schizosaccharomyces pombe|chr 1|||Manual Length = 2397 Score = 27.1 bits (57), Expect = 2.9 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -1 Query: 528 LQIVAHFSRE-SMLSLSASISLNTFVAGGESPMLINSTSKC 409 L+I+ FS E S+S S+ + + G+SP+L S+ C Sbjct: 743 LRIIVEFSEEMDCKSISKSLLITSKTLNGDSPVLDESSVTC 783 >SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 312 Score = 26.6 bits (56), Expect = 3.8 Identities = 10/19 (52%), Positives = 10/19 (52%) Frame = +2 Query: 50 RRCAACLCWLPWPGPRSRV 106 R C C CWLP SRV Sbjct: 113 RMCGTCKCWLPDRSHHSRV 131 >SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C |Schizosaccharomyces pombe|chr 3|||Manual Length = 176 Score = 26.2 bits (55), Expect = 5.0 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -3 Query: 361 PKDAGIVSLRF--SPTHMSSKPWSHPLITCPTPIWNVKVDRDHN 236 P D L+F S + ++ P+S P I +P+W+ VD N Sbjct: 68 PSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGN 111 >SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe|chr 1|||Manual Length = 229 Score = 25.8 bits (54), Expect = 6.7 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +1 Query: 94 TFAGPEVTELKTEVVSVPEGCTTKSKH 174 TF ++T L+ +++ +PEG +T KH Sbjct: 174 TFDDLQLTPLQRKLMGLPEGGSTSGKH 200 >SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 150 Score = 25.4 bits (53), Expect = 8.8 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +1 Query: 592 HDKLVEEIFQHEDKDKNGFISHEEFS 669 +++ V E F+ DKD NG+I+ EE + Sbjct: 83 NEEEVREAFKVFDKDGNGYITVEELT 108 >SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 783 Score = 25.4 bits (53), Expect = 8.8 Identities = 15/62 (24%), Positives = 30/62 (48%) Frame = +1 Query: 505 RKVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDKDKNGFISHEEFSGPKHD 684 +++S+++ ++ + +D E +D K + EE+ Q+E+ K EE P Sbjct: 419 QEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEELEFPDEV 478 Query: 685 EL 690 EL Sbjct: 479 EL 480 >SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces pombe|chr 3|||Manual Length = 174 Score = 25.4 bits (53), Expect = 8.8 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +1 Query: 598 KLVEEIFQHEDKDKNGFISHEEF 666 ++V++ DKD++G IS EEF Sbjct: 134 QIVDKTIMEVDKDRDGKISFEEF 156 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,078,959 Number of Sequences: 5004 Number of extensions: 63161 Number of successful extensions: 198 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 198 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 361294920 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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