Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1243
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    56   4e-09
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    51   2e-07
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    48   1e-06
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    29   0.54 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.9  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   3.8  
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2...    26   5.0  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    26   6.7  
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    25   8.8  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   8.8  
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    25   8.8  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 25/43 (58%), Positives = 30/43 (69%)
 Frame = +3

Query: 249 STFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERG 377
           S F   IGVGQ+I+GWD+G+  M +GEK KLTI    GYG RG
Sbjct: 45  SPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRG 87



 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 21/38 (55%), Positives = 26/38 (68%)
 Frame = +1

Query: 169 KHGDMLTMHYTGTLDDGHKFDSSYDRDQPLRSKLALGK 282
           K GD +TMHYTGTL +G KFDSS DR  P    + +G+
Sbjct: 18  KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQ 55



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +2

Query: 386 VIPPHATLHFEVELINIGD 442
           +IPP++TL F+VEL+ I D
Sbjct: 91  LIPPNSTLLFDVELLAIND 109


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 20/40 (50%), Positives = 30/40 (75%)
 Frame = +3

Query: 255 FTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGER 374
           FTF +G+ +VIKGWD G++ M VG +R + IPA++ YG +
Sbjct: 302 FTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYGSK 341


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 20/40 (50%), Positives = 28/40 (70%)
 Frame = +3

Query: 255 FTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGER 374
           F F +G G+VI+GWD G+  M  G +RK+TIPA + YG +
Sbjct: 301 FAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQ 340



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 100 AGPEVTELKTEVV--SVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSS 237
           + P+   LK  VV   V  G    + +G  + M Y G L++G  FD +
Sbjct: 248 SSPKTRTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENGKVFDKN 295


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 586 ESHDKLVEEIFQHEDKDKNGFISHEEF-SGPKHDEL*MSLRSL 711
           ++ +K V +IF   DK+K+G ++ EEF  G K D   +S  SL
Sbjct: 143 DTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSALSL 185


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 528 LQIVAHFSRE-SMLSLSASISLNTFVAGGESPMLINSTSKC 409
           L+I+  FS E    S+S S+ + +    G+SP+L  S+  C
Sbjct: 743 LRIIVEFSEEMDCKSISKSLLITSKTLNGDSPVLDESSVTC 783


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 50  RRCAACLCWLPWPGPRSRV 106
           R C  C CWLP     SRV
Sbjct: 113 RMCGTCKCWLPDRSHHSRV 131


>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 176

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 361 PKDAGIVSLRF--SPTHMSSKPWSHPLITCPTPIWNVKVDRDHN 236
           P D     L+F  S +  ++ P+S P I   +P+W+  VD   N
Sbjct: 68  PSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGN 111


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 94  TFAGPEVTELKTEVVSVPEGCTTKSKH 174
           TF   ++T L+ +++ +PEG +T  KH
Sbjct: 174 TFDDLQLTPLQRKLMGLPEGGSTSGKH 200


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 592 HDKLVEEIFQHEDKDKNGFISHEEFS 669
           +++ V E F+  DKD NG+I+ EE +
Sbjct: 83  NEEEVREAFKVFDKDGNGYITVEELT 108


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +1

Query: 505 RKVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDKDKNGFISHEEFSGPKHD 684
           +++S+++ ++ + +D  E  +D K  +       EE+ Q+E+  K      EE   P   
Sbjct: 419 QEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEELEFPDEV 478

Query: 685 EL 690
           EL
Sbjct: 479 EL 480


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 598 KLVEEIFQHEDKDKNGFISHEEF 666
           ++V++     DKD++G IS EEF
Sbjct: 134 QIVDKTIMEVDKDRDGKISFEEF 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,959
Number of Sequences: 5004
Number of extensions: 63161
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)