Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1243
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0) 79 4e-15
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 9e-11
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_49282| Best HMM Match : HEAT (HMM E-Value=0.016) 31 1.3
SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 29 3.1
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_42509| Best HMM Match : DUF533 (HMM E-Value=0.14) 29 4.1
SB_15164| Best HMM Match : Sas10_Utp3 (HMM E-Value=5.3) 29 5.4
SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62) 29 5.4
SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6) 28 7.1
SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42) 28 9.4
SB_20477| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053) 28 9.4
SB_25949| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_25627| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2) 28 9.4
SB_7894| Best HMM Match : Pox_A14 (HMM E-Value=0.13) 28 9.4
>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
Length = 266
Score = 79.0 bits (186), Expect = 4e-15
Identities = 68/203 (33%), Positives = 93/203 (45%), Gaps = 4/203 (1%)
Frame = +1
Query: 46 MTTLRCVLMLVALAGATFAGPEVT-ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 222
M L +L +VA +G E ELK EVVS PE CT K+ GD L+MHYTG L +G+
Sbjct: 1 MKGLMNLLAIVAFSGLALGAEEPKGELKIEVVSKPEKCTRKTHVGDTLSMHYTGRLANGN 60
Query: 223 KFDSSYDRDQPLRSKLALGK*SRDGTRACLTCALVRNVN*LFPHPWATESADRQRDSSPR 402
KFDSS DR + L G + + L + P P + + P
Sbjct: 61 KFDSSLDRGKTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIP-PHLAYGENGAGAAIPP 119
Query: 403 YIAFRSGVD--QHR*LSTGHKRVQGNRRR*GQHALPR-KVSDYLKKQMVPADGGEVSEDI 573
+ V+ + + V G + L + +V +YLK+Q GG S+D
Sbjct: 120 HATLYMDVELVEIQGSKESDPNVFGMIDKNNDKVLTQEEVKNYLKEQ-----GGMPSDD- 173
Query: 574 KQMLESHDKLVEEIFQHEDKDKN 642
SHD +V EIFQ EDKDK+
Sbjct: 174 ---EASHDTIVSEIFQQEDKDKD 193
Score = 72.1 bits (169), Expect = 4e-13
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +3
Query: 252 TFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERG 377
TF F +G G VI+GW+QGLLDMC+GEKRKLTIP L YGE G
Sbjct: 71 TFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAYGENG 112
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 380 GNVIPPHATLHFEVELINI-GDSPPATNVFKEIDADKDNMLSREK 511
G IPPHATL+ +VEL+ I G NVF ID + D +L++E+
Sbjct: 114 GAAIPPHATLYMDVELVEIQGSKESDPNVFGMIDKNNDKVLTQEE 158
>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 64.5 bits (150), Expect = 9e-11
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 9/196 (4%)
Frame = +1
Query: 118 ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRD---QPLRSKLALGK*S 288
+++ E VP C K+K GD + +HYTG + DG FD++ D QP + G
Sbjct: 99 KIEVEETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVI 158
Query: 289 RDGTRACLTCALVRNVN*LFPHPWA-----TESADRQRDSSPRYIAFRSGVDQHR*LSTG 453
+ + + + + P A + D + + + + R
Sbjct: 159 KGFEQGVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLELFDVR-KPPP 217
Query: 454 HKRVQGNRRR*GQHALPRK-VSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHED 630
H + + G L R+ VS Y++KQ A+ ++ H+++V+ +F++ED
Sbjct: 218 HSDMFSHMDENGDRKLSREEVSAYMRKQ---AEAQFAPTYDQRWQHHHERMVDNVFEYED 274
Query: 631 KDKNGFISHEEFSGPK 678
D++G ISHEEFSGPK
Sbjct: 275 HDEDGHISHEEFSGPK 290
Score = 58.0 bits (134), Expect = 8e-09
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +3
Query: 255 FTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERG 377
F F IG G VIKG++QG+ MCVG+KRK+ IP +L YG++G
Sbjct: 148 FEFTIGGGTVIKGFEQGVTGMCVGQKRKIVIPPALAYGKKG 188
Score = 35.1 bits (77), Expect = 0.062
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 380 GNVIPPHATLHFEVELINIGDSPPATNVFKEIDADKDNMLSREK 511
GN+ + TL + +EL ++ PP +++F +D + D LSRE+
Sbjct: 194 GNLDLTNTTLTYNLELFDVRKPPPHSDMFSHMDENGDRKLSREE 237
>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 35.5 bits (78), Expect = 0.047
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 595 DKLVEEIFQHEDKDKNGFISHEEF 666
D++VE +F + D DKNG IS+EEF
Sbjct: 696 DEMVEHVFAYADADKNGEISYEEF 719
>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 568 DIKQMLESHDKLVEEIFQHEDKDKNGFISHEEF 666
D K+ E ++ E + DKDK+GF+S +EF
Sbjct: 992 DPKERDEEISRMREHVMNEIDKDKDGFVSQDEF 1024
>SB_49282| Best HMM Match : HEAT (HMM E-Value=0.016)
Length = 474
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 750 LQICVKCWLLIMPKASETHLKFVVLRSREFLMADEAVFVFIFVL 619
LQ + W + KASE HL VVL S ++ DE + +F +
Sbjct: 394 LQSMIDSWCTDLLKASEHHLSSVVLESTGHVIDDEMLVKHLFTV 437
>SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 496 ALPRKVSDYLKKQMVPADGGEVSEDIKQMLESH-DKLVEEIFQHEDKDKNGFISHEEF 666
++ RKVS+ A GG D ++++E H +VE +F+ D +K+G IS +EF
Sbjct: 247 SVKRKVSNNSNVFADWASGGTAVPD-RRVVERHVSAMVEAVFRVYDTNKDGTISSKEF 303
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 604 VEEIFQHEDKDKNGFISHEEFS 669
+E+IFQ D+D +G+I H E S
Sbjct: 70 LEKIFQEIDEDNSGYIDHNEIS 91
>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 511 LFAGEHVVLIGVDFLEHVCGRWRVTDVDQLHFEMQCSVGRNHVA 380
L E V+ + V +E V R + DV QLH + + S+GR V+
Sbjct: 177 LIERESVIAVRVHLVECVWFRLPILDVQQLHVKYERSLGRELVS 220
>SB_42509| Best HMM Match : DUF533 (HMM E-Value=0.14)
Length = 773
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 349 PHPWATESADRQRDSSPRYIAFR 417
PH W T++ R D PR++A R
Sbjct: 327 PHSWRTDALLRAADKRPRFVALR 349
>SB_15164| Best HMM Match : Sas10_Utp3 (HMM E-Value=5.3)
Length = 478
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 252 TFTFQIGVGQVIKGWDQGLLDM-CVGEK-RKLTIPASLGYGERGPAT*FLPTLHCISKWS 425
TFT I + WD+G+LD+ GE+ +L++ G G AT L T+ S
Sbjct: 376 TFTAVIQQAKRSGRWDEGILDLGSHGEEVNELSVQTFAGVKSSGTATTELHTVSVERGMS 435
Query: 426 *STSVTLHRPQT 461
+VTL R T
Sbjct: 436 WDDAVTLWRETT 447
>SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 577 QMLESHDKLVEEIFQHEDKDKNGFISHEEF 666
QM H ++++ IF+ D+D G + +EEF
Sbjct: 54 QMNNEHLEVLQRIFEEADEDGGGGLDYEEF 83
>SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)
Length = 375
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 394 RNHVAGPRSP*PKDAGIVSLRFSPTHMSSKPWSHPLITC 278
++HVA PK G S H SS W HP ++C
Sbjct: 250 KSHVAAS----PKSHGAASPSLMGQHFSSLMWQHPQVSC 284
>SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 553 GEVSEDIKQMLESHDK---LVEEIFQHEDKDKNGFISHEE 663
G+ S + ++ + S ++ L F DKDK+GFI+H E
Sbjct: 294 GDRSREDQESVRSPNRRRTLFRHYFTKNDKDKDGFINHRE 333
>SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 1053
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = -3
Query: 253 VDRDHNSSRTCVRRLACQCSAW*AYRRAWTSWC 155
V D +S C R C W +AW WC
Sbjct: 956 VSPDASSFEYCARNRRCASQRWKDSAKAWLLWC 988
>SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)
Length = 1088
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Frame = -3
Query: 469 LEHVCGR-WRVTDVDQLHFEMQCSVGRNHVAGPRSP*PKDAGIVSLRFSPTHMSSKPWSH 293
L + GR WR TD QL + +G P D + S + + H
Sbjct: 897 LHDIKGRVWRQTDGCQLEVFREEWIGMQFETAVSQTRPDDMWVCSTNKMGAQVEERLLGH 956
Query: 292 PLITCPTPIWNVKVDRD 242
+ PTP N++ D D
Sbjct: 957 HKTSYPTPPANIRFDPD 973
>SB_20477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 622 HEDKDKNGFISHEEF 666
H DKDK G++ H+EF
Sbjct: 2 HFDKDKTGYLDHQEF 16
>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 106 PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 222
P T K +++ P+G TK +HG++ T+ + DG+
Sbjct: 51 PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGN 87
>SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)
Length = 263
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 517 DYLKKQMVPADGGEVSEDIKQMLESHD-KLVEEIFQHEDKDKNGFISHEEFS 669
D K M A E ++ +ML + + + +IF DKD++G+I+ E S
Sbjct: 192 DIHKSDMPRAQVEEAQNELVRMLSPREIQSLRDIFHAFDKDEDGYINSYEVS 243
>SB_25949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 547 DGGEVSEDIKQMLESHDKLVEEIFQHEDKDKNGFISHEEFSG--PKHDEL 690
DG + +DI +SHD + + H+D D +G SH++ HD++
Sbjct: 97 DGKDSHDDIDDGTDSHDDIDDGTDDHDDID-DGTDSHDDIDDGTDSHDDI 145
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 547 DGGEVSEDIKQMLESHDKLVEEIFQHEDKDKNGFISHEEFSGPKHD 684
DG + +DI +SHD + + H+D D +G H++ +D
Sbjct: 309 DGTDSHDDIDDGTDSHDDIDDGTDDHDDTD-DGTDGHDDIDDDTYD 353
>SB_25627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 622 HEDKDKNGFISHEEF 666
H DKDK G++ H+EF
Sbjct: 2 HFDKDKTGYLDHQEF 16
>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
Length = 466
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 106 PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 222
P T K +++ P+G TK +HG++ T+ + DG+
Sbjct: 165 PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGN 201
>SB_7894| Best HMM Match : Pox_A14 (HMM E-Value=0.13)
Length = 833
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -1
Query: 684 VVLRSREFLMADEAVFVFIFVLEDFLNKFIVTFQHLLDVFAYFTTVGGNHLLLQIVAHFS 505
V+L S E L + + +LE F +T L+D+F YF G + Q +
Sbjct: 104 VLLSSLERLSKSDDLLSVTAILERF-----ITSSKLVDIFTYFCIDGNAAVTQQRKSELH 158
Query: 504 RESMLSLSASI 472
R+ +++L SI
Sbjct: 159 RKQIITLIVSI 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,771,399
Number of Sequences: 59808
Number of extensions: 509772
Number of successful extensions: 1390
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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