SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1241
         (1005 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   181   2e-46
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    91   2e-19
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    87   5e-18
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    74   3e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    50   7e-07
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    45   2e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    45   2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    34   0.027
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.15 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.26 
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    30   0.45 
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    29   0.78 
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    28   1.8  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    28   1.8  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    28   2.4  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    28   2.4  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    27   4.2  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    27   4.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   7.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   9.6  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  181 bits (440), Expect = 2e-46
 Identities = 79/86 (91%), Positives = 82/86 (95%)
 Frame = +2

Query: 254 GRPRHQGVMVGMGXKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 433
           GRPRH G+MVGMG KDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELR
Sbjct: 36  GRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR 95

Query: 434 VAPEEHPVLLTEAPLNPKANREKMTR 511
           VAPEEHP LLTEAPLNPK+NREKMT+
Sbjct: 96  VAPEEHPCLLTEAPLNPKSNREKMTQ 121



 Score =  121 bits (292), Expect = 1e-28
 Identities = 58/82 (70%), Positives = 64/82 (78%)
 Frame = +1

Query: 439 PRGTPCPAH*GSPQPQGQQREDDQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 618
           P   PC        P+  + +  QI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGD
Sbjct: 98  PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157

Query: 619 GVSHTVPIYEGYALPHAILRLD 684
           GV+HTVPIYEGYALPHAI+RLD
Sbjct: 158 GVTHTVPIYEGYALPHAIMRLD 179



 Score = 70.1 bits (164), Expect = 5e-13
 Identities = 31/37 (83%), Positives = 34/37 (91%)
 Frame = +3

Query: 153 DEEVAALVVDNGSGMCKAGFAGXDAPRAVFPSIVEGP 263
           +EE+AALV+DNGSGMCKAGFAG DAPRAVFPSIV  P
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
 Frame = +2

Query: 254 GRPRHQGVMVGMGXKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-EL 430
           GR +H+ VM     KD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L
Sbjct: 40  GRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQL 99

Query: 431 RVAPEEHPVLLTEAPLNPKANREKM 505
              PEEHP+LLTE PL    N+EK+
Sbjct: 100 NTLPEEHPLLLTEPPLANIRNKEKI 124



 Score = 75.8 bits (178), Expect = 9e-15
 Identities = 31/55 (56%), Positives = 45/55 (81%)
 Frame = +1

Query: 508 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 672
           +  +ET N PA+  ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180



 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 171 LVVDNGSGMCKAGFAGXDAPRAVFPSIV 254
           + +DNGSG  KAGFAG D P+ +FP+ V
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCV 39


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 86.6 bits (205), Expect = 5e-18
 Identities = 34/70 (48%), Positives = 54/70 (77%)
 Frame = +2

Query: 296 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 475
           KD  VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P    +LLTE P
Sbjct: 50  KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109

Query: 476 LNPKANREKM 505
           +NP ANREKM
Sbjct: 110 MNPVANREKM 119



 Score = 76.6 bits (180), Expect = 5e-15
 Identities = 35/68 (51%), Positives = 47/68 (69%)
 Frame = +1

Query: 481 PQGQQREDDQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 660
           P   + +  + MFE +    +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE   L
Sbjct: 112 PVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVL 171

Query: 661 PHAILRLD 684
            H + RLD
Sbjct: 172 NHLVGRLD 179



 Score = 43.2 bits (97), Expect = 6e-05
 Identities = 20/39 (51%), Positives = 26/39 (66%)
 Frame = +3

Query: 159 EVAALVVDNGSGMCKAGFAGXDAPRAVFPSIVEGPAIRA 275
           E A +V+DNG+G  K G+A  + PR  FPSIV  P +RA
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRA 40


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
 Frame = +2

Query: 299 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 475
           D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE P
Sbjct: 73  DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132

Query: 476 LNPKANRE 499
           LNP  NRE
Sbjct: 133 LNPPENRE 140



 Score = 61.7 bits (143), Expect = 2e-10
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 8/72 (11%)
 Frame = +1

Query: 481 PQGQQREDDQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTV 636
           P   +    +IMFE+FN   +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHII 194

Query: 637 PIYEGYALPHAI 672
           P+ EGY +  +I
Sbjct: 195 PVAEGYVIGSSI 206



 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 14/28 (50%), Positives = 22/28 (78%)
 Frame = +3

Query: 171 LVVDNGSGMCKAGFAGXDAPRAVFPSIV 254
           +++DNG+G  K G+AG DAP  VFP+++
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 49.6 bits (113), Expect = 7e-07
 Identities = 27/73 (36%), Positives = 37/73 (50%)
 Frame = +2

Query: 341 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTRSCS 520
           + +K  I +G V NWD    +W +    +L+  P EHP+L+TE   NP  NR K T    
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK-TLETM 121

Query: 521 KHSTRPPCTSPSK 559
             S R P T  +K
Sbjct: 122 FESLRCPATYLAK 134



 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 508 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 660
           + MFE+   PA Y+A Q   + +ASG+ T  ++D G   S    IY+G+ L
Sbjct: 119 ETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169



 Score = 37.5 bits (83), Expect = 0.003
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +3

Query: 156 EEVAALVVDNGSGMCKAGFAGXDAPRAVFPS 248
           +EV+A+V+D GS   + GF+G D P+ V PS
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPS 39


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
 Frame = +2

Query: 260 PRHQGVMVGMGXKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 433
           P + GV   +  ++ YV DE Q    I  + +K    +GI+ +W+     W      +L+
Sbjct: 37  PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96

Query: 434 VAPEEHPVLLTEAPLNPKANREKM 505
           V P E+ +++TE   NP++ R+++
Sbjct: 97  VNPTEYAMMITEPSWNPQSVRQQI 120



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = +1

Query: 481 PQGQQREDDQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 660
           PQ  +++  +  FE  + PA Y+  QAV   +A+ ++T +++D G   +   P+ +G  +
Sbjct: 113 PQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLII 172

Query: 661 PHAILR 678
              I +
Sbjct: 173 RKGIFK 178



 Score = 33.9 bits (74), Expect = 0.036
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 156 EEVAALVVDNGSGMCKAGFAGXDAPRAVFPS 248
           EE+ +LV+D GS   + G+AG ++P  + PS
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPS 38


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = +2

Query: 308 VGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 484
           VG++   + G  ++ + P E  +++NWD ME++  +TF  +L +   EHP+ +TE   NP
Sbjct: 69  VGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANP 127

Query: 485 KANREKMT 508
              R  MT
Sbjct: 128 TYVRSTMT 135



 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +1

Query: 508 QIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEG 651
           +++FE +N P++   I  + S Y + +  ++GIVL+ G+  SH +P+  G
Sbjct: 136 ELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185



 Score = 31.9 bits (69), Expect = 0.15
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 171 LVVDNGSGMCKAGFAGXDAPRAVFPSIV 254
           LV+DNGS   +AG+ G   P+ VF ++V
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLV 54


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 34.3 bits (75), Expect = 0.027
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 508 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 651
           Q  FE    P   +A + ++ LYA G   G+V+D G   +   PI +G
Sbjct: 167 QFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 356 PIEHGIVTNWDDMEKIWHHTF 418
           PI+ G V +W+ ++  W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +2

Query: 539  PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 673
            P T+P  P    T PV P  S   P+   P P PS+     P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +2

Query: 536  PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 673
            PP  +P  P      P VPP     P+T  P P PS      P P+
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPP-----PSTAPPVPTPSAGLPPVPVPT 1233



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
 Frame = +2

Query: 536  PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTRDTHSPTPS 673
            PP   PS       +P   VPPV    P+   P P PS      P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +2

Query: 536  PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTRDTHSPTPS 673
            PP  +PS       +P   VPPV    P+   P P PS      P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 512 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 673
           SC+  ++ PP T  S   S    P VPP S   T   + PT   ST    SP P+
Sbjct: 171 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224



 Score = 29.9 bits (64), Expect = 0.59
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 512 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 673
           SC+  ++ PP T  S   S    P VPP S   T   + PT   ST    +P P+
Sbjct: 114 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
 Frame = +2

Query: 464 TEAPLNPKANREKMTRSCSKHSTRPPCTSPSK--PCSRCTRPVVPPVSCWTPATVSPTPC 637
           T  P+ P +     T S    +T   CT+ +   P    T PV P        TV PT  
Sbjct: 259 TSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTP--------TVPPT-- 308

Query: 638 PSTRDTHSPTPSCVWTLXGRDLHRLPHEDSS 730
            ST  T +P P    +  G     LP   +S
Sbjct: 309 -STSSTSTPPPPASTSSTGTSSSPLPSTSTS 338



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
 Frame = +2

Query: 464 TEAPLNPKANREKMTRSCSKHSTRPPCTSP-------SKPCSRCTRPVVPPVS-CWTPAT 619
           T  P+ P +     T S    +T   CT+        S   S    P VPP S   T   
Sbjct: 203 TSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIP 262

Query: 620 VSPTPCPSTRDTHSPTPS 673
           + PT   ST    SP P+
Sbjct: 263 IPPTSTSSTDTNSSPLPT 280



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 512 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPC-PSTRDTHSPTP 670
           SC+  ++ PP  + + P +    P VPP S  TP T   T C  ST   ++ TP
Sbjct: 392 SCTTSTSIPPTGNSTTPVT----PTVPPTSSSTPLTT--TNCTTSTSVPYTSTP 439


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +2

Query: 419 YNELRVAPEEHPVLLTEAPLNPK-ANREKMTRSCSKHSTRPPCTSPSKPCSRCTRPVVPP 595
           Y+EL +A +E P  L   P  PK A++ K   +  K +      S  KP S+ TRP +P 
Sbjct: 23  YSELPIAYQEIP--LQSLPPYPKVASKLKGVVAGGKENN---IASFQKPSSKATRPYIPS 77

Query: 596 VSCWTPATVSPTPCP 640
            +  T  +V P P P
Sbjct: 78  YTRLT-YSVPPLPIP 91


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 293 VPYRPSRPDGGAFHDRGEHGARSIXSCETGLAHT 192
           VPY PS+P+GGA+   G H  R + +    L  T
Sbjct: 88  VPY-PSKPNGGAYQGIGFHYGRFVMNLRKALTST 120


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 416  FYNELRVAPEEHPVLLTE--APLNPKANREKMTRSCSKHSTRP 538
            +Y  L    E+HP+LLT+  A L P+ +  ++ R   K    P
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 560 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 664
           PC+     + PPV+C TP    P  C   +  H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 28/111 (25%), Positives = 39/111 (35%)
 Frame = +2

Query: 470 APLNPKANREKMTRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTR 649
           +P++P ANR    R  S     PP +   KP +   R V    S  +P  +   P   T 
Sbjct: 146 SPISPSANRNDSKRQASSFRRSPPSSVHMKPSAFNGRKVSRRPSS-SPPPIPSIP-HETT 203

Query: 650 DTHSPTPSCVWTLXGRDLHRLPHEDSSTERGXXVQLPXPNREIRAFTXRRS 802
            + +   S V +    + H   H     ER      P   R     T R S
Sbjct: 204 SSDTQKKSSVSSGFPENKHGKFHFHIPNERRSRFDQPPSKRMALTSTARES 254


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
 Frame = +2

Query: 410 HTFYNELRVAPEEHPVLL---TEAPLNPK----ANREKMTRSCSKHSTRPPCTSPSKPCS 568
           H  +N    +P  +P  L   T  P NP     A     +   S+H +     +PS   +
Sbjct: 201 HPIHNHPYSSPTSYPPPLCPATYCPSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINN 260

Query: 569 RCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 664
               P+ P ++ W P T  PT  P + + + P
Sbjct: 261 HTAVPLSPTLAVWLPMT-QPTFQPPSANVYQP 291


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 560 PCSRCTRPVVPPVSCWTPATVSPTPCPST 646
           P SR T+P+    S  +P  VSP   PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 536 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 643
           PP   P    +  T PV  PV+    A   P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = +2

Query: 395  EKIWHHTFYNELRVAPEEHPVLLTE-APLNPKANREKMTRSCSKHSTRPPCTSPSKPCSR 571
            E+I   T   E    P  H +  T  AP+ PK ++     + S   T P  TS + P + 
Sbjct: 784  EEIQRLTMLLEPHAVPPIHQIKQTGYAPVQPKTSQ-----ASSILPTVPRTTSYTSPYAT 838

Query: 572  CTRPVVPPVSCWTPATVSPTPCPSTRDT 655
             +  +       TPA V P P PST  T
Sbjct: 839  TSSHI-------TPADVHPLPPPSTSTT 859


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = +2

Query: 470  APLNPKANREKMTRSCSKHSTRPPCTSPSKPCSRCTRPV---VPPVSCWTPATVSPTPCP 640
            AP+ PKA            +  PP      P +    PV   +P V+   P++V+P   P
Sbjct: 1456 APVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAP 1515

Query: 641  ST 646
            S+
Sbjct: 1516 SS 1517


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 542 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT 685
           C +PS+    C    + PV   +  T S TP P+T  + +PTP+   T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST 869


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,714,032
Number of Sequences: 5004
Number of extensions: 74728
Number of successful extensions: 276
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 521265546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -