BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1236 (671 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 61 1e-10 SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 58 9e-10 SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 55 1e-08 SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 52 1e-07 SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 35 0.009 SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 30 0.35 SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 28 1.4 SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 27 1.9 SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 27 1.9 SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 27 3.3 SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 7.5 SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 25 7.5 SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 9.9 SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po... 25 9.9 SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 9.9 >SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 356 Score = 61.3 bits (142), Expect = 1e-10 Identities = 25/47 (53%), Positives = 29/47 (61%) Frame = +2 Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFHA 649 S HCR C +CV K DHHC WIN CVG N YF FL+ + FH+ Sbjct: 171 SKHCRLCNICVEKFDHHCIWINNCVGLNNARYFFLFLLCTIQLLFHS 217 >SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 329 Score = 58.4 bits (135), Expect = 9e-10 Identities = 24/52 (46%), Positives = 30/52 (57%) Frame = +2 Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFHASVVLS 664 SHHC +C C+L+MDHHC W CVG NH +F FL L + V+ S Sbjct: 110 SHHCSQCNKCILRMDHHCMWFKNCVGFRNHKFF--FLECFYLNLYSICVLYS 159 Score = 28.3 bits (60), Expect = 1.1 Identities = 11/35 (31%), Positives = 14/35 (40%) Frame = +2 Query: 494 IQGSTSHHCRKCGLCVLKMDHHCPWINCCVGHANH 598 +Q S C KC HHC N C+ +H Sbjct: 91 LQNGKSRFCEKCQEYKCDRSHHCSQCNKCILRMDH 125 >SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 350 Score = 54.8 bits (126), Expect = 1e-08 Identities = 19/44 (43%), Positives = 26/44 (59%) Frame = +2 Query: 515 HCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFH 646 HC C CV +DHHC W+N C+G N+ Y+ FL+ VL + Sbjct: 197 HCHLCDNCVEYLDHHCIWLNTCIGRRNYRYYFIFLLSVVLSALY 240 >SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 642 Score = 51.6 bits (118), Expect = 1e-07 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +2 Query: 491 RIQGSTSHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFL 619 +++ S+HC C C+ + DHHCPW CVG NH F F+ Sbjct: 407 QVKPPRSYHCGACKRCINRYDHHCPWTGNCVGARNHRTFLLFV 449 >SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 312 Score = 35.1 bits (77), Expect = 0.009 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +2 Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMF 625 SHH R C+ K DH+C ++ V +N +F FL + Sbjct: 126 SHHSRVSMRCIRKFDHYCSFVGKDVCFSNQKFFYQFLFY 164 >SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual Length = 503 Score = 29.9 bits (64), Expect = 0.35 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = +3 Query: 147 LMNPAHSVSKLIEPELILENNGSLSVSTIIALGSHIVLGI 266 +++P + ++PEL+L+ G SV T SH + G+ Sbjct: 208 ILSPGYEQENTLKPELVLQMEGMDSVQTCEEAASHCMTGL 247 >SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase Gpt1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1448 Score = 27.9 bits (59), Expect = 1.4 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +3 Query: 135 KNDLLMNPAHSVSKLIEPELILENNGSLSVSTIIALGS 248 +N L+ A S K I+ + +LEN GSL+ I+ +GS Sbjct: 641 RNPLVYPSAKSSIKSIDIKRVLENVGSLNHEDILLIGS 678 >SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 794 Score = 27.5 bits (58), Expect = 1.9 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = -3 Query: 480 CKIVDIGHPLLCQAAIPKARTQVPQVMIARNNI 382 C I+D+ + IPK R +PQ + + NN+ Sbjct: 184 CPIIDVDQKKVIAIDIPKVRRPIPQDVNSDNNL 216 >SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 293 Score = 27.5 bits (58), Expect = 1.9 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%) Frame = +2 Query: 512 HHCRKCG--LCVLKMDHHCP 565 HHCR+CG C L D + P Sbjct: 176 HHCRRCGDIFCALHCDRNIP 195 >SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 528 Score = 26.6 bits (56), Expect = 3.3 Identities = 10/24 (41%), Positives = 12/24 (50%) Frame = -2 Query: 466 YWASSSLSGCHPKGTNPGPSSNDC 395 Y SS+ S CH G PG + C Sbjct: 234 YSVSSTCSSCHGSGLQPGSHKSTC 257 >SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Schizosaccharomyces pombe|chr 1|||Manual Length = 1188 Score = 25.4 bits (53), Expect = 7.5 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +3 Query: 228 TIIALGSHIVLGIIKL-ITWAMVHMLGMWWP 317 T ++ H+ LG + L + AM+H+L + WP Sbjct: 1071 TAASVIKHLSLGCVGLGVEDAMIHLLNILWP 1101 >SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 562 Score = 25.4 bits (53), Expect = 7.5 Identities = 8/28 (28%), Positives = 18/28 (64%) Frame = -3 Query: 114 MFIHHLIYSIFDTRSRVLMILNQEKYCI 31 +F+++ + S+F + +L I + E YC+ Sbjct: 140 LFVNNFLISLFSGLANILQIDSDELYCV 167 >SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1842 Score = 25.0 bits (52), Expect = 9.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +1 Query: 529 WLVRFEDGPSLPVDKLLRWSR 591 W VRF+ G S+ + K LR+ R Sbjct: 1120 WSVRFKRGTSMLIPKALRFDR 1140 >SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces pombe|chr 1|||Manual Length = 163 Score = 25.0 bits (52), Expect = 9.9 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +3 Query: 402 LLEGPGFVPLGWQPDKEE 455 L+ PG P+GW+P EE Sbjct: 95 LISPPGSPPVGWEPIVEE 112 >SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1396 Score = 25.0 bits (52), Expect = 9.9 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 8/104 (7%) Frame = +1 Query: 292 STCWECGGPLKLHSMHRFMQ-QCSCHLLREHYIISCNHYLRDLGSCLWD----GSLTKKR 456 S C E + ++ R ++ CSC L Y +HY+R + + D G R Sbjct: 155 SYCGEGHSKVATITVRRLLEFVCSCRLPASKYDHPRSHYIRRICEIIRDAFDLGDFYNHR 214 Query: 457 MPNIYNFAQFVK---DTRLHVTPL*EMWLVRFEDGPSLPVDKLL 579 + ++N +K + PL + W D S+ V +L Sbjct: 215 ILRVFNSGDQIKVDVAQTMCARPLIQCWDNNMRDFDSISVIDIL 258 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,246,178 Number of Sequences: 5004 Number of extensions: 75533 Number of successful extensions: 213 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 213 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 307866294 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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