Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1236
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 61 1e-10
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 58 9e-10
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 55 1e-08
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 52 1e-07
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 35 0.009
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 30 0.35
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 28 1.4
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 27 1.9
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 27 1.9
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 27 3.3
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 7.5
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 25 7.5
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 9.9
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po... 25 9.9
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 9.9
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 61.3 bits (142), Expect = 1e-10
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2
Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFHA 649
S HCR C +CV K DHHC WIN CVG N YF FL+ + FH+
Sbjct: 171 SKHCRLCNICVEKFDHHCIWINNCVGLNNARYFFLFLLCTIQLLFHS 217
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 58.4 bits (135), Expect = 9e-10
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +2
Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFHASVVLS 664
SHHC +C C+L+MDHHC W CVG NH +F FL L + V+ S
Sbjct: 110 SHHCSQCNKCILRMDHHCMWFKNCVGFRNHKFF--FLECFYLNLYSICVLYS 159
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = +2
Query: 494 IQGSTSHHCRKCGLCVLKMDHHCPWINCCVGHANH 598
+Q S C KC HHC N C+ +H
Sbjct: 91 LQNGKSRFCEKCQEYKCDRSHHCSQCNKCILRMDH 125
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 54.8 bits (126), Expect = 1e-08
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2
Query: 515 HCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFH 646
HC C CV +DHHC W+N C+G N+ Y+ FL+ VL +
Sbjct: 197 HCHLCDNCVEYLDHHCIWLNTCIGRRNYRYYFIFLLSVVLSALY 240
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 51.6 bits (118), Expect = 1e-07
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +2
Query: 491 RIQGSTSHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFL 619
+++ S+HC C C+ + DHHCPW CVG NH F F+
Sbjct: 407 QVKPPRSYHCGACKRCINRYDHHCPWTGNCVGARNHRTFLLFV 449
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 35.1 bits (77), Expect = 0.009
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMF 625
SHH R C+ K DH+C ++ V +N +F FL +
Sbjct: 126 SHHSRVSMRCIRKFDHYCSFVGKDVCFSNQKFFYQFLFY 164
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 29.9 bits (64), Expect = 0.35
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 147 LMNPAHSVSKLIEPELILENNGSLSVSTIIALGSHIVLGI 266
+++P + ++PEL+L+ G SV T SH + G+
Sbjct: 208 ILSPGYEQENTLKPELVLQMEGMDSVQTCEEAASHCMTGL 247
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 135 KNDLLMNPAHSVSKLIEPELILENNGSLSVSTIIALGS 248
+N L+ A S K I+ + +LEN GSL+ I+ +GS
Sbjct: 641 RNPLVYPSAKSSIKSIDIKRVLENVGSLNHEDILLIGS 678
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 480 CKIVDIGHPLLCQAAIPKARTQVPQVMIARNNI 382
C I+D+ + IPK R +PQ + + NN+
Sbjct: 184 CPIIDVDQKKVIAIDIPKVRRPIPQDVNSDNNL 216
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Frame = +2
Query: 512 HHCRKCG--LCVLKMDHHCP 565
HHCR+CG C L D + P
Sbjct: 176 HHCRRCGDIFCALHCDRNIP 195
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 466 YWASSSLSGCHPKGTNPGPSSNDC 395
Y SS+ S CH G PG + C
Sbjct: 234 YSVSSTCSSCHGSGLQPGSHKSTC 257
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 228 TIIALGSHIVLGIIKL-ITWAMVHMLGMWWP 317
T ++ H+ LG + L + AM+H+L + WP
Sbjct: 1071 TAASVIKHLSLGCVGLGVEDAMIHLLNILWP 1101
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -3
Query: 114 MFIHHLIYSIFDTRSRVLMILNQEKYCI 31
+F+++ + S+F + +L I + E YC+
Sbjct: 140 LFVNNFLISLFSGLANILQIDSDELYCV 167
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 529 WLVRFEDGPSLPVDKLLRWSR 591
W VRF+ G S+ + K LR+ R
Sbjct: 1120 WSVRFKRGTSMLIPKALRFDR 1140
>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 402 LLEGPGFVPLGWQPDKEE 455
L+ PG P+GW+P EE
Sbjct: 95 LISPPGSPPVGWEPIVEE 112
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.0 bits (52), Expect = 9.9
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Frame = +1
Query: 292 STCWECGGPLKLHSMHRFMQ-QCSCHLLREHYIISCNHYLRDLGSCLWD----GSLTKKR 456
S C E + ++ R ++ CSC L Y +HY+R + + D G R
Sbjct: 155 SYCGEGHSKVATITVRRLLEFVCSCRLPASKYDHPRSHYIRRICEIIRDAFDLGDFYNHR 214
Query: 457 MPNIYNFAQFVK---DTRLHVTPL*EMWLVRFEDGPSLPVDKLL 579
+ ++N +K + PL + W D S+ V +L
Sbjct: 215 ILRVFNSGDQIKVDVAQTMCARPLIQCWDNNMRDFDSISVIDIL 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,178
Number of Sequences: 5004
Number of extensions: 75533
Number of successful extensions: 213
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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