Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1236
(671 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12) 60 2e-09
SB_15004| Best HMM Match : zf-DHHC (HMM E-Value=2.7e-27) 59 4e-09
SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23) 57 1e-08
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_20368| Best HMM Match : zf-DHHC (HMM E-Value=2.6e-12) 38 0.006
SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 31 0.84
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 30 1.5
SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11) 30 2.0
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_12727| Best HMM Match : zf-CHY (HMM E-Value=3.7e-34) 29 3.4
SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0) 29 3.4
SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_33603| Best HMM Match : PHD (HMM E-Value=0.00046) 28 7.9
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_43761| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_28538| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12)
Length = 341
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +2
Query: 491 RIQGSTSHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFHA 649
RI+ S +HHC C CV M HHCP+ N C+G N+ Y+ +FL+ AV+G +A
Sbjct: 133 RIRSSGTHHCSWCHTCVEMMCHHCPFTNNCIGLRNYIYYYSFLLQAVVGLGYA 185
>SB_15004| Best HMM Match : zf-DHHC (HMM E-Value=2.7e-27)
Length = 559
Score = 58.8 bits (136), Expect = 4e-09
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +2
Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFHASVVLSI 667
S HC C C+ + DHHC W+N C+G N+G+F F+ A C + + ++ I
Sbjct: 65 SKHCSLCKACINRFDHHCSWVNNCIGANNYGFFIGFIFTAAALCIYVTFLVMI 117
>SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)
Length = 393
Score = 57.2 bits (132), Expect = 1e-08
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +2
Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVL 634
S HCR C CVL +DHHC ++ CCVG+ NH F F+ +L
Sbjct: 238 SKHCRLCNHCVLAIDHHCLFLMCCVGYKNHRAFVVFMSLVLL 279
>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 55.6 bits (128), Expect = 3e-08
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +2
Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFHASV 655
++HC C +CVL+ DHHC + CVGH+N+ Y+ + LG +A++
Sbjct: 119 AYHCHVCDICVLRRDHHCIFAGKCVGHSNYRYYLFLAFYLWLGALYANL 167
>SB_20368| Best HMM Match : zf-DHHC (HMM E-Value=2.6e-12)
Length = 288
Score = 38.3 bits (85), Expect = 0.006
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 515 HCRKCGLCVLKMDHHCPWI 571
HC C CV + DHHCPWI
Sbjct: 160 HCSMCDNCVERFDHHCPWI 178
>SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 252 IVLGIIKLITWAMVHMLGMWWPPQTSFYASLHAAMFLSFAAGTLYYFLQSLLEGPGFV 425
I+ G+ L+T+ M ++G+W P + + + +FL A TL+ F+ + G F+
Sbjct: 85 IIFGVYSLVTFLMSPLMGIWLPKVGPRF-MITSGLFLMGGAETLFGFVADMPNGSVFI 141
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = -3
Query: 153 SLINHF*FFSI------FTMFIHHLIYSIFDTRSRVLMILNQEKYCITTFH 19
S+I H FFSI F + HH I+SIF +I + + I T+H
Sbjct: 1093 SIITHHYFFSIITYHYFFVIITHHYIFSIFTHHYFFSIITHHYSFVIITYH 1143
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = +2
Query: 512 HHCRKCGLCVLKMDH--HCPWINCCV 583
+HC KCG+C + D HC N C+
Sbjct: 1941 YHCDKCGICRIHKDQSFHCEVCNVCL 1966
>SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)
Length = 829
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Frame = +2
Query: 509 SHHCR---KCGLCVLKMDHHCPWI-NCCV--GHAN 595
+HHC C CVL D +C W + CV GHAN
Sbjct: 347 THHCAHYTSCTTCVLTRDPYCGWSEDKCVTKGHAN 381
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 491 RIQGSTSHHCRKCGLCVLKMDHHCPWINCCVGHA 592
R+ G + HH R GLC+ HH C+ HA
Sbjct: 1486 RLAGLSIHHTRLVGLCI----HHARLAGLCIHHA 1515
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 491 RIQGSTSHHCRKCGLCVLKMDHHCPWINCCVGHA 592
R+ G + HH R GLC+ H + C+ HA
Sbjct: 1826 RLVGLSIHHARLAGLCI----HRSRLVGLCIHHA 1855
>SB_12727| Best HMM Match : zf-CHY (HMM E-Value=3.7e-34)
Length = 168
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +2
Query: 515 HCRKCGLCVL---KMDHHCPWINCCVG 586
HC CG+C + K +HCP + C+G
Sbjct: 89 HCDACGICRIGGRKNFYHCPRCDICLG 115
>SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)
Length = 758
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +2
Query: 515 HCRKCGLCVL---KMDHHCPWINCCVG 586
HC CG+C + K +HCP + C+G
Sbjct: 89 HCDACGICRIGGRKNFYHCPRCDICLG 115
>SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 181 SNPNSYWKTMV-LSPFRRLLHWGPISF*V**N**HGPWSTCWECGGP 318
+NPN+YW T + ++L W P+S N + CW P
Sbjct: 420 TNPNAYWSTPIKTGSANQMLRWSPMSINCERNAEFRRQNCCWPTATP 466
>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 311 VAPSNFILCIASCSNVPVICCGNIIL 388
+ P NF L +AS P + CGN+++
Sbjct: 474 ITPWNFPLNMASVKIAPALACGNVVI 499
>SB_33603| Best HMM Match : PHD (HMM E-Value=0.00046)
Length = 396
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +1
Query: 298 CWECGGPLKLHSMHRFMQQCSCHLLREHYIISCNHYLR--DLGSCLWDGSLTKKRMPNIY 471
C CG P K + +C + + +SC Y R D W ++ PN +
Sbjct: 103 CGACGKPTKSNQKAICCDECGHWMHAKCIYMSCESYQRYVDESKLTWICNIC--TFPN-F 159
Query: 472 NFAQFVKDTRL 504
+ FV+DTRL
Sbjct: 160 SSGHFVEDTRL 170
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +1
Query: 298 CWECGGPLKLHSMHRFMQQCSCHLLREHYIISCNHYLR--DLGSCLWDGSLTKKRMPNIY 471
C CG P K + +C + + +SC Y R D W ++ PN +
Sbjct: 103 CGACGKPTKSNQKAICCDECGHWMHAKCIYMSCESYQRYVDESKLTWICNIC--AFPN-F 159
Query: 472 NFAQFVKDTRL 504
+ FV+DTRL
Sbjct: 160 SSGHFVEDTRL 170
>SB_43761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 218 LRFDDYCTGV-PYRFRYNKINNMGHGPHAGNVVAPSNFILCIASCS 352
+R+ D TG R N + M H PHAG V ++ L + +C+
Sbjct: 60 IRYSDCVTGSGTSRVFNNGVLRMTHSPHAGGVTLKADGSLRLLNCT 105
>SB_28538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 299 AGNVVAPSNFILCIASCSNVPVICCGNIILFLAII 403
AG VV + ++ + SC+N P CG L L ++
Sbjct: 102 AGIVVTSTVAVIAVYSCNNHPASKCGGRCLILLVV 136
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,056,513
Number of Sequences: 59808
Number of extensions: 567250
Number of successful extensions: 1534
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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