Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1236
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69634-10|CAA93457.2| 431|Caenorhabditis elegans Hypothetical p... 91 5e-19
Z68507-8|CAA92831.2| 431|Caenorhabditis elegans Hypothetical pr... 91 5e-19
Z81473-2|CAB03898.1| 240|Caenorhabditis elegans Hypothetical pr... 69 3e-12
Z81473-1|CAB03897.1| 302|Caenorhabditis elegans Hypothetical pr... 69 3e-12
Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical pr... 68 5e-12
Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical pr... 68 5e-12
Z22180-12|CAH19086.1| 405|Caenorhabditis elegans Hypothetical p... 68 5e-12
Z22180-11|CAD54147.2| 403|Caenorhabditis elegans Hypothetical p... 68 5e-12
AF039720-11|AAK68359.1| 260|Caenorhabditis elegans Hypothetical... 67 1e-11
Z71177-7|CAI46554.1| 351|Caenorhabditis elegans Hypothetical pr... 64 9e-11
U00046-3|AAC47045.2| 244|Caenorhabditis elegans Hypothetical pr... 61 6e-10
U51999-3|AAA96084.1| 306|Caenorhabditis elegans Hypothetical pr... 60 2e-09
U40415-9|AAK39249.3| 281|Caenorhabditis elegans Hypothetical pr... 55 5e-08
Z79600-1|CAB01873.1| 239|Caenorhabditis elegans Hypothetical pr... 54 7e-08
AL110487-6|CAB54433.2| 472|Caenorhabditis elegans Hypothetical ... 54 9e-08
AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical ... 53 2e-07
AL032657-2|CAA21738.1| 368|Caenorhabditis elegans Hypothetical ... 52 3e-07
U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical pr... 51 7e-07
U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical pr... 51 7e-07
Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical ... 50 2e-06
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 30 1.7
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 29 4.0
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 28 6.9
>Z69634-10|CAA93457.2| 431|Caenorhabditis elegans Hypothetical
protein M18.8 protein.
Length = 431
Score = 91.5 bits (217), Expect = 5e-19
Identities = 32/50 (64%), Positives = 39/50 (78%)
Frame = +2
Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFHASVV 658
SHHC KC C +KMDHHCPWIN CVGH NH YF FL F+V+GC H++++
Sbjct: 119 SHHCSKCDRCCMKMDHHCPWINNCVGHRNHQYFLRFLFFSVVGCIHSTII 168
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/75 (34%), Positives = 38/75 (50%)
Frame = +3
Query: 285 AMVHMLGMWWPPQTSFYASLHAAMFLSFAAGTLYYFLQSLLEGPGFVPLGWQPDKEEDAQ 464
A+ + W P TS+ + FL + T+ + GPG+VP GW+P+ D +
Sbjct: 44 AVTTFFALQWMPVTSYMGLFNTLTFLLWNYLTIGNLFNASFFGPGYVPRGWRPENAADEK 103
Query: 465 YLQFCTICKGYKAPR 509
LQFC C G+K PR
Sbjct: 104 KLQFCVPCNGFKVPR 118
>Z68507-8|CAA92831.2| 431|Caenorhabditis elegans Hypothetical
protein M18.8 protein.
Length = 431
Score = 91.5 bits (217), Expect = 5e-19
Identities = 32/50 (64%), Positives = 39/50 (78%)
Frame = +2
Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFHASVV 658
SHHC KC C +KMDHHCPWIN CVGH NH YF FL F+V+GC H++++
Sbjct: 119 SHHCSKCDRCCMKMDHHCPWINNCVGHRNHQYFLRFLFFSVVGCIHSTII 168
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/75 (34%), Positives = 38/75 (50%)
Frame = +3
Query: 285 AMVHMLGMWWPPQTSFYASLHAAMFLSFAAGTLYYFLQSLLEGPGFVPLGWQPDKEEDAQ 464
A+ + W P TS+ + FL + T+ + GPG+VP GW+P+ D +
Sbjct: 44 AVTTFFALQWMPVTSYMGLFNTLTFLLWNYLTIGNLFNASFFGPGYVPRGWRPENAADEK 103
Query: 465 YLQFCTICKGYKAPR 509
LQFC C G+K PR
Sbjct: 104 KLQFCVPCNGFKVPR 118
>Z81473-2|CAB03898.1| 240|Caenorhabditis elegans Hypothetical
protein C17D12.1b protein.
Length = 240
Score = 68.9 bits (161), Expect = 3e-12
Identities = 25/54 (46%), Positives = 34/54 (62%)
Frame = +2
Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFHASVVLSIC 670
+HHCR C CV KMDHHCPW+N CVG N +F F+ + ++ +VL +C
Sbjct: 64 AHHCRVCKRCVRKMDHHCPWVNNCVGEYNQKWFLQFIFYVGASSAYSLLVLCLC 117
>Z81473-1|CAB03897.1| 302|Caenorhabditis elegans Hypothetical
protein C17D12.1a protein.
Length = 302
Score = 68.9 bits (161), Expect = 3e-12
Identities = 25/54 (46%), Positives = 34/54 (62%)
Frame = +2
Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFHASVVLSIC 670
+HHCR C CV KMDHHCPW+N CVG N +F F+ + ++ +VL +C
Sbjct: 126 AHHCRVCKRCVRKMDHHCPWVNNCVGEYNQKWFLQFIFYVGASSAYSLLVLCLC 179
>Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 68.1 bits (159), Expect = 5e-12
Identities = 25/49 (51%), Positives = 30/49 (61%)
Frame = +2
Query: 494 IQGSTSHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGC 640
I+ SHHC C CVLK DHHCPW+N CV N+ YF FL + + C
Sbjct: 142 IKPDRSHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYFILFLAYGFIFC 190
>Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 68.1 bits (159), Expect = 5e-12
Identities = 25/49 (51%), Positives = 30/49 (61%)
Frame = +2
Query: 494 IQGSTSHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGC 640
I+ SHHC C CVLK DHHCPW+N CV N+ YF FL + + C
Sbjct: 140 IKPDRSHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYFILFLAYGFIFC 188
>Z22180-12|CAH19086.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 68.1 bits (159), Expect = 5e-12
Identities = 25/49 (51%), Positives = 30/49 (61%)
Frame = +2
Query: 494 IQGSTSHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGC 640
I+ SHHC C CVLK DHHCPW+N CV N+ YF FL + + C
Sbjct: 142 IKPDRSHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYFILFLAYGFIFC 190
>Z22180-11|CAD54147.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 68.1 bits (159), Expect = 5e-12
Identities = 25/49 (51%), Positives = 30/49 (61%)
Frame = +2
Query: 494 IQGSTSHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGC 640
I+ SHHC C CVLK DHHCPW+N CV N+ YF FL + + C
Sbjct: 140 IKPDRSHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYFILFLAYGFIFC 188
>AF039720-11|AAK68359.1| 260|Caenorhabditis elegans Hypothetical
protein F33D11.12 protein.
Length = 260
Score = 66.9 bits (156), Expect = 1e-11
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = +2
Query: 494 IQGSTSHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFHA 649
I+ +HHC C C+ +MDHHCPW+N CVG N +F F M+ L HA
Sbjct: 92 IKPDRAHHCSVCERCIRRMDHHCPWVNNCVGEGNQKFFVLFTMYIALLSMHA 143
>Z71177-7|CAI46554.1| 351|Caenorhabditis elegans Hypothetical
protein AC3.10 protein.
Length = 351
Score = 64.1 bits (149), Expect = 9e-11
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +2
Query: 494 IQGSTSHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMF 625
I+ + HC CG C +K DHHCPWIN CV H N+ YF ++++
Sbjct: 162 IKPDRARHCSSCGKCCIKYDHHCPWINMCVTHVNYKYFLLYIIY 205
>U00046-3|AAC47045.2| 244|Caenorhabditis elegans Hypothetical
protein R13F6.5 protein.
Length = 244
Score = 61.3 bits (142), Expect = 6e-10
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = +2
Query: 512 HHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMF 625
HHCR+C LCV +MDHHCP + C+ NH YF FL++
Sbjct: 96 HHCRRCNLCVHRMDHHCPILQLCIHSGNHKYFLLFLVW 133
>U51999-3|AAA96084.1| 306|Caenorhabditis elegans Hypothetical
protein C43H6.7 protein.
Length = 306
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/56 (46%), Positives = 34/56 (60%)
Frame = +2
Query: 497 QGSTSHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFHASVVLS 664
+ +HHC C CVL MDHHC WIN CVG NH +F FL A L A+++++
Sbjct: 112 KSDNAHHCSVCEKCVLGMDHHCIWINQCVGLHNHRHF--FLFIANLTLAAATIIIA 165
>U40415-9|AAK39249.3| 281|Caenorhabditis elegans Hypothetical
protein K02G10.1 protein.
Length = 281
Score = 54.8 bits (126), Expect = 5e-08
Identities = 21/43 (48%), Positives = 25/43 (58%)
Frame = +2
Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLG 637
SHHC C +CVL+ DHHC CVG N YF FL + +G
Sbjct: 144 SHHCPLCKMCVLRKDHHCFITGACVGLGNQRYFMVFLFWCAIG 186
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +2
Query: 503 STSHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTT 613
S S C C + HHCP CV +H F T
Sbjct: 128 SGSKFCFTCNKEAPQRSHHCPLCKMCVLRKDHHCFIT 164
>Z79600-1|CAB01873.1| 239|Caenorhabditis elegans Hypothetical
protein F59C6.2 protein.
Length = 239
Score = 54.4 bits (125), Expect = 7e-08
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +2
Query: 497 QGSTSHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMF 625
+G ++ HC+ C C+ +MDHHCP I CVG N +F FL +
Sbjct: 49 KGPSTSHCKACDKCIYRMDHHCPHIGQCVGAHNQSHFFLFLFY 91
>AL110487-6|CAB54433.2| 472|Caenorhabditis elegans Hypothetical
protein Y39E4B.7 protein.
Length = 472
Score = 54.0 bits (124), Expect = 9e-08
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +2
Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFL 619
S HC C C+ DHHCPW++ CVG N+ YF FL
Sbjct: 116 SSHCSVCNRCIETFDHHCPWVHNCVGKRNYRYFFFFL 152
>AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical
protein H32C10.3 protein.
Length = 783
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/53 (45%), Positives = 29/53 (54%)
Frame = +2
Query: 503 STSHHCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFAVLGCFHASVVL 661
S+SHHC +C CV DHHCPWI+ CV N F F + + FH VL
Sbjct: 552 SSSHHCSQCDKCVDGFDHHCPWIHKCVYRKNLRAFVFFCL--TIFMFHVFYVL 602
>AL032657-2|CAA21738.1| 368|Caenorhabditis elegans Hypothetical
protein Y47H9C.2 protein.
Length = 368
Score = 52.4 bits (120), Expect = 3e-07
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +2
Query: 515 HCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFL 619
HC C CVL DHHCPW+ C+G N+ YF F+
Sbjct: 179 HCAICDNCVLMFDHHCPWVGNCIGLRNYTYFYRFV 213
>U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical
protein D2021.2b protein.
Length = 214
Score = 51.2 bits (117), Expect = 7e-07
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2
Query: 515 HCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLM 622
HC CG CV DHHCPW+N CV N F F++
Sbjct: 63 HCAVCGFCVNNFDHHCPWLNSCVTRRNMREFIMFVI 98
>U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical
protein D2021.2a protein.
Length = 322
Score = 51.2 bits (117), Expect = 7e-07
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2
Query: 515 HCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLM 622
HC CG CV DHHCPW+N CV N F F++
Sbjct: 171 HCAVCGFCVNNFDHHCPWLNSCVTRRNMREFIMFVI 206
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 231 IIALGSHIVLGIIKLITW-AMVHMLGMWWPPQTSFYASLHAAMFLSFAAGTL 383
++ G I I+ +++W A H WW Q F S+ A F F GTL
Sbjct: 78 LLPYGVTIAEAILMVLSWSAYAHWYVPWW-AQMLFVLSVLALAFTLFRIGTL 128
>Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical
protein F09B12.2 protein.
Length = 295
Score = 50.0 bits (114), Expect = 2e-06
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +2
Query: 509 SHHCRKCGLCVLKMDHHCPWINCCVGHANHGYF 607
+HHC C +C+L+ DHHC + CVGH N YF
Sbjct: 116 AHHCPVCDVCILRRDHHCSFGAVCVGHFNQRYF 148
>AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical
protein T22E7.2 protein.
Length = 257
Score = 50.0 bits (114), Expect = 2e-06
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 515 HCRKCGLCVLKMDHHCPWINCCVGHANHGYFTTFLMFA---VLGCFHASVVL 661
HC++C C+ DHHC W+N C+G N+ F ++ + CF SVV+
Sbjct: 52 HCKRCNFCIDDFDHHCVWLNNCIGGKNYRPFVVLVICVNVFSMFCFGLSVVI 103
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = -2
Query: 463 WASSSLSGCHPKGTN-----PGPSSNDCKK*YNVPAANDRNIA--A*SDA*NE 326
W SS + CH +G N PG + KK V A ND+N+ A DA NE
Sbjct: 142 WISSKIQKCHEQGVNSVCWAPGSADPAAKK-RLVSAGNDKNVKIWAFDDATNE 193
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = -2
Query: 463 WASSSLSGCHPKGTN-----PGPSSNDCKK*YNVPAANDRNI 353
W SS + CH +G N PG + KK V A ND+N+
Sbjct: 142 WISSKIQKCHEQGVNSVCWAPGSADPAAKK-RLVSAGNDKNV 182
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Frame = -2
Query: 604 IPMVSVTNATIYPRAM-MVHLQNAQATFPT-VV*RGALYPLQIVQNCRYWASSSLSGCHP 431
+PM TN T A+ +H A P V R Y N R W LSG
Sbjct: 1697 VPMSLSTNCTTMRIALEYLHQNGAVLKSPLPVCSRNGNYDQTQCDNKRCWCVDELSGEEI 1756
Query: 430 KGTNPGPSSNDCK 392
GT + N CK
Sbjct: 1757 HGTRKKKTKNACK 1769
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,057,854
Number of Sequences: 27780
Number of extensions: 429110
Number of successful extensions: 1141
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -