Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1236
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    27   0.16 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.1  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 239 TGVPYRFRYNKINNMGHGPHAGNVVAPSNFILCIASCSNVPVICCGNIILFL 394
           + +P+   Y K+N + + P +GN  A S     +   ++ P+     II FL
Sbjct: 172 SAIPFAI-YTKVNLVEYPPESGNYSADSAMCAMLTIYADFPLYELSTIIFFL 222


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 165 SVSKLIEPELILENNGSLSVSTIIALGSHIVLG 263
           ++SKL +PE+ ++    +  S  + LG+ + LG
Sbjct: 270 NLSKLSDPEVWIDAVTQIFFSYALGLGALVALG 302


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 165 SVSKLIEPELILENNGSLSVSTIIALGSHIVLG 263
           ++SKL +PE+ ++    +  S  + LG+ + LG
Sbjct: 323 NLSKLSDPEVWIDAVTQIFFSYALGLGALVALG 355


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 237 ALGSHIVLGIIKLITWAMVHMLGMWWPPQTSFYASLHAAMFLSFA 371
           A    + LGI  ++T   + +      P+  +  +L   +FLSFA
Sbjct: 241 ATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFA 285


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 207 NGSLSVSTIIALGSHIVLGIIKLITWAMVHMLGMW 311
           +G LS   +I     IVL     I WA++ ++G+W
Sbjct: 154 DGKLSRGQVILF---IVLIWTYTIPWALMPVMGVW 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,822
Number of Sequences: 438
Number of extensions: 5807
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)