Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1231
         (806 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    57   5e-07
UniRef50_Q7NB68 Cluster: Putative uncharacterized protein; n=1; ...    36   1.6  
UniRef50_Q5CW08 Cluster: Predicted membrane associated protein, ...    34   4.8  
UniRef50_A3ZFD1 Cluster: Membrane protein, putative; n=2; Campyl...    33   6.4  
UniRef50_Q9NZJ4 Cluster: Sacsin; n=44; Deuterostomia|Rep: Sacsin...    33   8.5  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 57.2 bits (132), Expect = 5e-07
 Identities = 28/40 (70%), Positives = 33/40 (82%)
 Frame = -1

Query: 599 ILFYCLLADPADFLVPQSINKRPKLLYKIN*NKQKESVRR 480
           ILF  +LADPADF+VPQSINKRPK LYKIN  KQ + +R+
Sbjct: 16  ILFMIILADPADFVVPQSINKRPKHLYKIN-LKQTKGIRQ 54


>UniRef50_Q7NB68 Cluster: Putative uncharacterized protein; n=1;
           Mycoplasma gallisepticum|Rep: Putative uncharacterized
           protein - Mycoplasma gallisepticum
          Length = 868

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 478 GYIKGKTIFFNSEHFHIYFKPFKPSLDFHKSFKTK 374
           GY   KT FF+ +HF I    FKP  +F  + KTK
Sbjct: 437 GYHNEKTPFFDDKHFQILKTNFKPEFNFTTNLKTK 471


>UniRef50_Q5CW08 Cluster: Predicted membrane associated protein,
           signal peptide plus transmembrane domain or GPI anchor
           at C-terminus; n=2; Cryptosporidium|Rep: Predicted
           membrane associated protein, signal peptide plus
           transmembrane domain or GPI anchor at C-terminus -
           Cryptosporidium parvum Iowa II
          Length = 793

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -2

Query: 469 KGKTIFFNSEHFHIYFKPFKPSLD-FHKSFKTKICQIGPAQVLARLTNSNSFLY-ICRRK 296
           K KT   N  +F IY     P L  +H    T +  +G   +++       F Y + +RK
Sbjct: 309 KSKTKKKNKRNFRIYLPEEMPDLYVYHHQVNTCVLNLG---IMSLYPELKVFFYDVFKRK 365

Query: 295 YDYLPTDHQLITLSKKLMLNSPFYCN 218
             Y     + IT+S+K +L S   CN
Sbjct: 366 PTYYLFHRKPITISRKTLLRSNQLCN 391


>UniRef50_A3ZFD1 Cluster: Membrane protein, putative; n=2;
           Campylobacter jejuni|Rep: Membrane protein, putative -
           Campylobacter jejuni subsp. jejuni HB93-13
          Length = 824

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
 Frame = -2

Query: 400 DFHKSFKTKICQIGPAQVLARLTNSNSFLYICRRKYDYLPTDHQLITLSKKLMLNSPFY- 224
           DF    K   C+ G  +       SNSFL     ++DY+  ++ L+T +    LN+  Y 
Sbjct: 60  DFKYEIKFTNCKFGCLEYFCLYKTSNSFLIFENCEFDYICLNNDLVT-NNTFELNNKLYF 118

Query: 223 --CNFNTLKSCKHAHV-----FNTCKHADVY 152
             C FN        ++     FN C   DV+
Sbjct: 119 FDCKFNENIDIGKVNINAEIKFNGCIFKDVF 149


>UniRef50_Q9NZJ4 Cluster: Sacsin; n=44; Deuterostomia|Rep: Sacsin -
            Homo sapiens (Human)
          Length = 4579

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 289  YLPTDHQLITLSKKLMLNSPFYCNFNTLKSCKHAHVFNTCKHADV 155
            +L T H+LI   K L +N+ +    N L +CK A VF+    AD+
Sbjct: 3173 FLTTYHELIPSRKDLFMNTLYLKYSNILLNCKVAKVFDISSFADL 3217


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,462,454
Number of Sequences: 1657284
Number of extensions: 13466020
Number of successful extensions: 26355
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26345
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)