Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1231
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 473 VSTVGRIPFVCFSLFYTKVLVFY 541
           VS + R   + F LF+  + VFY
Sbjct: 420 VSKIDRASRIVFPLFFLAINVFY 442


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 503 CFSLFYTKVLVFYLSIEA 556
           C S+ Y  VL FYL  ++
Sbjct: 246 CVSISYLSVLAFYLPADS 263


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 792  KKFSMRIKNIKYLHTHYYVLNT*FYLSHFPD 700
            KK  +R K  +YL     ++NT    +HF D
Sbjct: 1380 KKIDVRAKLNEYLDKADVIVNTPIMDAHFKD 1410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,474
Number of Sequences: 438
Number of extensions: 4477
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)