BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1231 (806 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 7.7 AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 7.7 AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 7.7 >DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel protein. Length = 463 Score = 21.8 bits (44), Expect = 7.7 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +2 Query: 473 VSTVGRIPFVCFSLFYTKVLVFY 541 VS + R + F LF+ + VFY Sbjct: 420 VSKIDRASRIVFPLFFLAINVFY 442 >AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic acetylcholine receptorApisa2 subunit protein. Length = 541 Score = 21.8 bits (44), Expect = 7.7 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = +2 Query: 503 CFSLFYTKVLVFYLSIEA 556 C S+ Y VL FYL ++ Sbjct: 246 CVSISYLSVLAFYLPADS 263 >AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor protein. Length = 1770 Score = 21.8 bits (44), Expect = 7.7 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = -3 Query: 792 KKFSMRIKNIKYLHTHYYVLNT*FYLSHFPD 700 KK +R K +YL ++NT +HF D Sbjct: 1380 KKIDVRAKLNEYLDKADVIVNTPIMDAHFKD 1410 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 207,474 Number of Sequences: 438 Number of extensions: 4477 Number of successful extensions: 9 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9 length of database: 146,343 effective HSP length: 57 effective length of database: 121,377 effective search space used: 25610547 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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