Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1231
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53330.1 68414.m06045 pentatricopeptide (PPR) repeat-containi...    29   3.6  
At1g60180.1 68414.m06779 hypothetical protein similar to hypothe...    28   8.4  

>At1g53330.1 68414.m06045 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 471

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 424 FKPFKPSLDFHKSFKTKICQIGPAQVLARLTNS 326
           FK +KP  D  + F  K+C+ G  ++L+++ +S
Sbjct: 391 FKGYKPRRDRLEGFLQKLCESGKLEILSKVISS 423


>At1g60180.1 68414.m06779 hypothetical protein similar to
           hypothetical protein GI:6017113 from [Arabidopsis
           thaliana]
          Length = 296

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 458 CFTFDVSTVGRIPFVCFSLFYTKVLVFYLSIEALRSLPGQLVNNKIKWRCNIL 616
           C   DVS++      CF   + K L  YL  + L+ L       K+ + CNIL
Sbjct: 93  CALVDVSSLDEAQVDCFIYSHLKTLDAYLLQDILKMLEKLQNAEKLIFGCNIL 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,393,931
Number of Sequences: 28952
Number of extensions: 301427
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)