Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1230
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    27   2.3  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   3.0  
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    26   5.3  
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||...    26   5.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.0  

>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 397 FHKSFKTKICQIGPAQVLARLTNSNSFLYI--CRRKYDYL 284
           +H S+ T      P  VL+ + N  S +YI   R  YD+L
Sbjct: 498 YHSSWVTSNAYSSPTVVLSTVLNDGSLMYIDDFREAYDWL 537


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 354 AGPIWHILVLNDLWKSRE 407
           +GPIW +   N+ W+SRE
Sbjct: 917 SGPIWQLKKENNYWESRE 934


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 508 KTNKRNPSDGGYIKGKTIFFNSEHFHIYFKPFKPSLDFHKSFKT 377
           K + RNP    +  G T  F  E F I    F PS    +S +T
Sbjct: 272 KASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAET 315


>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 485 GRIPFVCFSLFYTKVLVFYLSIEALR 562
           GR+ F+CF +     L+  L+I+ LR
Sbjct: 276 GRLRFICFLILLIVALIVILAIKLLR 301


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 214  NTLKSCKHAHVFNTCKHA 161
            N LKSC + H   T KHA
Sbjct: 1637 NLLKSCIYVHEMETLKHA 1654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,724
Number of Sequences: 5004
Number of extensions: 49612
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)