Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1230
         (638 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL157766-1|CAI13922.2| 4432|Homo sapiens spastic ataxia of Charl...    33   0.86 
AF193556-1|AAF31262.1| 3829|Homo sapiens sacsin protein.               33   0.86 

>AL157766-1|CAI13922.2| 4432|Homo sapiens spastic ataxia of
            Charlevoix-Saguenay (sacsin) protein.
          Length = 4432

 Score = 33.1 bits (72), Expect = 0.86
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 289  YLPTDHQLITLSKKLMLNSPFYCNFNTLKSCKHAHVFNTCKHADV 155
            +L T H+LI   K L +N+ +    N L +CK A VF+    AD+
Sbjct: 3026 FLTTYHELIPSRKDLFMNTLYLKYSNILLNCKVAKVFDISSFADL 3070


>AF193556-1|AAF31262.1| 3829|Homo sapiens sacsin protein.
          Length = 3829

 Score = 33.1 bits (72), Expect = 0.86
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 289  YLPTDHQLITLSKKLMLNSPFYCNFNTLKSCKHAHVFNTCKHADV 155
            +L T H+LI   K L +N+ +    N L +CK A VF+    AD+
Sbjct: 2423 FLTTYHELIPSRKDLFMNTLYLKYSNILLNCKVAKVFDISSFADL 2467


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,064,822
Number of Sequences: 237096
Number of extensions: 1596093
Number of successful extensions: 2602
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2602
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)