Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1230
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68337-9|CAA92751.2|  334|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AY204185-1|AAO39189.1|  400|Caenorhabditis elegans nuclear recep...    27   8.6  
AL022272-4|CAC42310.2|  391|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z68337-9|CAA92751.2|  334|Caenorhabditis elegans Hypothetical
           protein M7.13 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 347 NLSWTDLAYFGLE*FMEVQRRFKRFKINMKMLGIKKNCF 463
           NL   D+AYFGL  F       K+F +  +++GI  N F
Sbjct: 178 NLQMEDIAYFGLN-FYGTDNNGKQFIVYEQVVGIVVNSF 215


>Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical
           protein F25D1.2 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 319 FLYICRRKYDYLPTDHQLITLSKKLMLNS---PFYCN 218
           F  I    Y YLP +HQ+I ++  L++ S    F CN
Sbjct: 271 FFLIITSSYPYLPPNHQMIAMTVLLLILSISFTFPCN 307


>AY204185-1|AAO39189.1|  400|Caenorhabditis elegans nuclear receptor
           NHR-101 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 301 RKYDYLPTDHQLITLSKKLMLNSPFYCNFNTLKSCKHAH 185
           R  DYLP       L  K +LN P + +   L S KH +
Sbjct: 150 RLSDYLPKRSLKEALCSKSLLNDPIFLSKYALPSSKHTY 188


>AL022272-4|CAC42310.2|  391|Caenorhabditis elegans Hypothetical
           protein H12C20.6a protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 301 RKYDYLPTDHQLITLSKKLMLNSPFYCNFNTLKSCKHAH 185
           R  DYLP       L  K +LN P + +   L S KH +
Sbjct: 141 RLSDYLPKRSLKEALCSKSLLNDPIFLSKYALPSSKHTY 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,682,114
Number of Sequences: 27780
Number of extensions: 268053
Number of successful extensions: 589
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)