Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1230
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53330.1 68414.m06045 pentatricopeptide (PPR) repeat-containi...    29   2.6  
At5g67130.1 68418.m08463 expressed protein                             27   7.9  
At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ...    27   7.9  

>At1g53330.1 68414.m06045 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 471

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 424 FKPFKPSLDFHKSFKTKICQIGPAQVLARLTNS 326
           FK +KP  D  + F  K+C+ G  ++L+++ +S
Sbjct: 391 FKGYKPRRDRLEGFLQKLCESGKLEILSKVISS 423


>At5g67130.1 68418.m08463 expressed protein
          Length = 426

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 241 LNSPFYCNFNTLKSCKHAHVFNTCKHADV 155
           +N P  C   TL +C+    + +CK+  V
Sbjct: 345 MNGPVLCGCETLSACQPGAAYGSCKNVTV 373


>At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein,
           putative similar to PIF3 like basic Helix Loop Helix
           protein (PIL1) [Arabidopsis thaliana] GI:22535492;
           contains Myc-type, 'helix-loop-helix' dimerization
           domain signature, PROSITE:PS00038
          Length = 416

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 16  FQNKTSRELRI--LHEKHNNVTERSELYYVSDTND*TLDSTAVFIGLRTRQRVYKY*TRE 189
           F   TSR+L    L  K+ ++ E  E  Y+S+ +D   D     +  RTR+ V K     
Sbjct: 173 FSRGTSRDLSCCSLKRKYGDI-EEEESTYLSNNSDDESDDAKTQVHARTRKPVTKRKRST 231

Query: 190 RVYKI 204
            V+K+
Sbjct: 232 EVHKL 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,634,239
Number of Sequences: 28952
Number of extensions: 239250
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)