Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1228
         (747 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7PRW7 Cluster: ENSANGP00000019346; n=1; Anopheles gamb...    34   3.2  
UniRef50_Q72A26 Cluster: Portal protein; n=2; Desulfovibrio vulg...    33   7.5  
UniRef50_Q9LH75 Cluster: Ac transposase-like protein; n=3; core ...    33   7.5  
UniRef50_Q7RG33 Cluster: Mus musculus RIKEN cDNA 2310047O13 gene...    33   9.9  

>UniRef50_Q7PRW7 Cluster: ENSANGP00000019346; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000019346 - Anopheles gambiae
           str. PEST
          Length = 406

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 560 FHIKPPQVFRIPNST*CF*FRITHLHTDMKIS*TVRKKSQNKGGFSKLIHCLRIVLL 730
           FH   P +   PNS   F  R THLH    +   VR +  N+  F + +H  +  LL
Sbjct: 179 FHF--PDLLVFPNSAKSFWSRATHLHDQFLLQNKVRTEKSNRSLFPRFLHTQQACLL 233


>UniRef50_Q72A26 Cluster: Portal protein; n=2; Desulfovibrio
           vulgaris subsp. vulgaris|Rep: Portal protein -
           Desulfovibrio vulgaris (strain Hildenborough / ATCC
           29579 / NCIMB8303)
          Length = 517

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 285 FDVLASSLPKDSYTTDVIEALISEWNTIFMYAKNLTKHFC 166
           ++VL     K +Y++    AL+  W TI  Y   LT+H+C
Sbjct: 356 YEVLTKDFSKTNYSS-ARAALLEAWRTILYYRDFLTRHYC 394


>UniRef50_Q9LH75 Cluster: Ac transposase-like protein; n=3; core
           eudicotyledons|Rep: Ac transposase-like protein -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 662

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 321 DPQWRQHENALNFDVLASSLPKDSYTTDVIEALISEWN 208
           D +WR H N LNF  L  S  +D  +  +I  LI EW+
Sbjct: 222 DEEWRLHRNVLNFITLDPSHTEDMLSEVIIRCLI-EWS 258


>UniRef50_Q7RG33 Cluster: Mus musculus RIKEN cDNA 2310047O13 gene;
           n=4; Plasmodium (Vinckeia)|Rep: Mus musculus RIKEN cDNA
           2310047O13 gene - Plasmodium yoelii yoelii
          Length = 807

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -2

Query: 446 RSFKNIPNQHNFVDIVLNTGVTIFS*YLPAGHPNHSSANYARIHNGGNTKMLSTLM 279
           R+  N+ +  + ++  LN  V I S Y   G+ N+S+  +  I+NG ++K    +M
Sbjct: 539 RACSNVFDNTSIINTFLNNDVDIVSTYENGGNNNYSNPYFVGINNGNDSKNSQNIM 594


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 713,654,673
Number of Sequences: 1657284
Number of extensions: 13983637
Number of successful extensions: 28354
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28353
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)