Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1228
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    28   1.6  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   6.6  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    25   8.7  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = -3

Query: 727  QNYSKAMNELRKTTFILALFAYRLRNLHIGMEVSDSKLKALRTIWYSKN 581
            +N S AM E+   +F L   ++ L NL + +E   SK   LRTI+YSK+
Sbjct: 1137 ENGSSAMVEILPGSFSLKTPSW-LPNLTLNLE---SKSTTLRTIYYSKD 1181


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = -2

Query: 446 RSFKNIPNQHNFVDIVLNTGVTIFS*YLPAGHPNHSSANYARIHNGGNTKMLSTLMFSLV 267
           R F  IP++   + + LNT  T F         N ++ N+  + N     ++    +  V
Sbjct: 451 RGFPYIPDEDTIISLGLNTHPTFFG----CDGRNTTAGNHT-VDNNTPPLLVYFPNYPWV 505

Query: 266 RYPRTATLQTSLRRLLASGI 207
            Y   +T   S+   L+SGI
Sbjct: 506 YYSNISTFTMSMNDTLSSGI 525


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 318 DPGIIGATVVGVTSGQISGKYCYAG 392
           DPG     ++GV S  ++  + YAG
Sbjct: 213 DPGAFNNGIIGVISSFVNAAFAYAG 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,707
Number of Sequences: 5004
Number of extensions: 63601
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)