Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1228
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    29   5.2  
03_02_0572 + 9569578-9570534                                           29   5.2  
06_03_0177 - 17579474-17580109,17580549-17580626,17581160-175813...    28   9.1  
06_01_0288 - 2106113-2109055                                           28   9.1  

>12_02_0134 -
           14071190-14071435,14071800-14071988,14072114-14072194,
           14072261-14072404,14072528-14072761,14072836-14073981,
           14074863-14074922,14075178-14075420,14075509-14075607,
           14076196-14076367,14076597-14076735,14077514-14077624,
           14077695-14077797,14077885-14077962,14078054-14078122,
           14078203-14078275,14078891-14078975,14079473-14079536,
           14079963-14080073,14080139-14080213,14080306-14080398,
           14080982-14081056,14081172-14081261
          Length = 1259

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 320 IHNGGNTKMLSTLMFSLVRYPRTATLQTSLRRLLASGIPFLC 195
           + NGG ++  S    +L  +PR AT+ T L+  L+ G   LC
Sbjct: 724 LENGGQSRS-SLCETALALFPRMATIHTLLKLWLSDGSEALC 764


>03_02_0572 + 9569578-9570534
          Length = 318

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 306 QHENALNFDVLASSLPKDSYTTDVIEALI 220
           ++ENA  F V+ +  P D +TTD +E L+
Sbjct: 283 KYENAKGFAVIQTLHPGDEHTTDGVETLL 311


>06_03_0177 -
           17579474-17580109,17580549-17580626,17581160-17581309,
           17581415-17581538,17583227-17583315,17583431-17583507,
           17584413-17584822,17586203-17586216
          Length = 525

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 306 QHENALNFDVLASSLPKD-SYTTDVIEALISEWNTI 202
           QH +  N  +L   LP +  +TTD+I  LIS W+ +
Sbjct: 72  QHASTANQWLLDLDLPTNVGWTTDLISQLISVWSAV 107


>06_01_0288 - 2106113-2109055
          Length = 980

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
 Frame = +2

Query: 191 AYIKMVFHSLISASMTSVV*LSLGSELARTSKLRAFSCCRHCG---SWHNWRYCGWGDQR 361
           A I ++ HS+ +A   +   + + SE       +A  C    G   SW     C WG   
Sbjct: 15  ALISLLCHSIANAGKEAAAAVCITSERDALLAFKAGLCADSAGELPSWQGHDCCSWGSVS 74

Query: 362 ANIR 373
            N R
Sbjct: 75  CNKR 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,587,237
Number of Sequences: 37544
Number of extensions: 363007
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)