Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1228
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039720-13|AAB96705.1|  245|Caenorhabditis elegans Hypothetical...    31   1.1  
AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z74039-7|CAA98506.1|  290|Caenorhabditis elegans Hypothetical pr...    28   6.1  
L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z99281-26|CAE18029.1|  377|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z46793-1|CAA86770.1|  367|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF039720-13|AAB96705.1|  245|Caenorhabditis elegans Hypothetical
           protein F33D11.11 protein.
          Length = 245

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 103 PFFSYATTHLTQKNTTRDKICFTV 32
           PF    T+H+T KNT+ + +CF V
Sbjct: 21  PFSDVVTSHMTLKNTSTNPVCFKV 44


>AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical
           protein F56E10.3 protein.
          Length = 475

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 485 TTTSCILLSRSIIPWTLRFIIPF*MFHIKPPQVFR 589
           T TS  L S S+ P+T  F IP+ +F  K P   R
Sbjct: 190 TYTSISLFSLSLFPFTFPFSIPYFLFSYKFPSFCR 224


>Z74039-7|CAA98506.1|  290|Caenorhabditis elegans Hypothetical
           protein K03B8.7 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 364 CPLVTPTTVAPIMPGSTMAATRKCSQL 284
           CPLV P+  AP  P +    T KCS L
Sbjct: 39  CPLVGPSCPAPRAPCNASVETVKCSAL 65


>L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical
           protein K06H7.2 protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/56 (25%), Positives = 32/56 (57%)
 Frame = +3

Query: 543 LYHFKCSTLSHLKFFEYQIVRNAFNLESLTSIPI*RFLKRYAKRARIKVVFRSSFI 710
           LY +  + +S+ +FFE +  + +FN  ++T   I +F+K +     ++  F+ +F+
Sbjct: 253 LYLYHKTNISNEQFFELKAKKCSFNSSNITDEAINKFIKNWINGKSVE-GFKEAFL 307


>Z99281-26|CAE18029.1|  377|Caenorhabditis elegans Hypothetical
           protein Y57G11C.46 protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -3

Query: 703 ELRKTTFILAL---FAYRLRNLHIGMEVSDSKLKALRTIWYSKNLRWLNV 563
           +L+K T+ LA+       LR LH+ + +S   L +L  IWYS + +W  +
Sbjct: 236 KLKKKTYSLAIEFQINQNLRILHLVLPLS--LLTSLAFIWYSISPKWFKI 283


>Z46793-1|CAA86770.1|  367|Caenorhabditis elegans Hypothetical
           protein C56G7.2 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 324 QDPQWRQHENALNFDVLASSLPKDSYTTDVIEALISEW 211
           Q   W   E+ LN DV  + L +++ T   + A I +W
Sbjct: 235 QHADWITSEDLLNLDVQTAMLIENNLTEQDLNAFIKQW 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,862,257
Number of Sequences: 27780
Number of extensions: 351072
Number of successful extensions: 776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)