Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1228
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.14 
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    24   1.7  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    24   1.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 91   YATTHLTQKNTTRDKICFTV 32
            + T H TQ   T DKICFT+
Sbjct: 1686 HCTIHRTQVKETDDKICFTM 1705


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 318 DPGIIGATVVGVTS 359
           DPG++   V+GVTS
Sbjct: 129 DPGLVAGIVIGVTS 142


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 318 DPGIIGATVVGVTS 359
           DPG++   V+GVTS
Sbjct: 100 DPGLVAGIVIGVTS 113


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 466 NHVPLGHDDFMYLIISFYNTMDATFHYT 549
           N++ +  DD     IS YN+ D TF  T
Sbjct: 115 NYIYVKSDDIWVPDISVYNSGDMTFDQT 142


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 297 FRVAAIVDPGIIGATVVGV 353
           FR   ++DP   G+T +G+
Sbjct: 49  FRCVFVLDPWFAGSTNIGI 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,613
Number of Sequences: 438
Number of extensions: 4637
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)