Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1228
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52460.1 68418.m06509 F-box family protein contains F-box dom...    28   7.6  
At5g44970.1 68418.m05515 hypothetical protein contains a novel d...    27   10.0 
At2g46880.2 68415.m05854 calcineurin-like phosphoesterase family...    27   10.0 
At2g46880.1 68415.m05853 calcineurin-like phosphoesterase family...    27   10.0 

>At5g52460.1 68418.m06509 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 369

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 339 TVVGVTSGQISGKYCYAGIKYNVYEVMLIRYVFKTAELNKNV 464
           TV    S  +  ++ + G + N  E  LIRY+F  A+  K V
Sbjct: 280 TVPRCLSAHLDEEFVWHGYRGNEEETQLIRYIFANAKCLKKV 321


>At5g44970.1 68418.m05515 hypothetical protein contains a novel
           domain with similarity to F-box domain;
          Length = 389

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 567 LSHLKFFEYQIVRNAFNLESLTSIPI 644
           L H+K    +I+R  F+LE +T+IPI
Sbjct: 151 LLHVKSLTLKILRLVFDLEMMTTIPI 176


>At2g46880.2 68415.m05854 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 327

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 616 LKALRTIWYSKNLRWLNVEHLKW 548
           +K  +  WY    +WL +EH +W
Sbjct: 219 VKTSQQNWYEHTSKWLEMEHKRW 241


>At2g46880.1 68415.m05853 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 401

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 616 LKALRTIWYSKNLRWLNVEHLKW 548
           +K  +  WY    +WL +EH +W
Sbjct: 219 VKTSQQNWYEHTSKWLEMEHKRW 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,519,501
Number of Sequences: 28952
Number of extensions: 309108
Number of successful extensions: 582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)